MANIFEST.in
README.md
pyproject.toml
setup.py
cpp/rat.cpp
cpp/RAT/CoderTimeAPI.cpp
cpp/RAT/CoderTimeAPI.h
cpp/RAT/DREAM.cpp
cpp/RAT/DREAM.h
cpp/RAT/DREAMWrapper.cpp
cpp/RAT/DREAMWrapper.h
cpp/RAT/RATMain.a
cpp/RAT/RATMain.cpp
cpp/RAT/RATMain.h
cpp/RAT/RATMain_data.cpp
cpp/RAT/RATMain_data.h
cpp/RAT/RATMain_initialize.cpp
cpp/RAT/RATMain_initialize.h
cpp/RAT/RATMain_internal_types.h
cpp/RAT/RATMain_rtwutil.cpp
cpp/RAT/RATMain_rtwutil.h
cpp/RAT/RATMain_terminate.cpp
cpp/RAT/RATMain_terminate.h
cpp/RAT/RATMain_types.h
cpp/RAT/README.md
cpp/RAT/SLDFunction.cpp
cpp/RAT/SLDFunction.h
cpp/RAT/abelesParallelPoints.cpp
cpp/RAT/abelesParallelPoints.h
cpp/RAT/abelesSingle.cpp
cpp/RAT/abelesSingle.h
cpp/RAT/abs.cpp
cpp/RAT/abs.h
cpp/RAT/acos.cpp
cpp/RAT/acos.h
cpp/RAT/adaptPCR.cpp
cpp/RAT/adaptPCR.h
cpp/RAT/adaptive.cpp
cpp/RAT/adaptive.h
cpp/RAT/all.cpp
cpp/RAT/all.h
cpp/RAT/allOrAny.cpp
cpp/RAT/allOrAny.h
cpp/RAT/allocateLayersForContrast.cpp
cpp/RAT/allocateLayersForContrast.h
cpp/RAT/allocateParamsToLayers.cpp
cpp/RAT/allocateParamsToLayers.h
cpp/RAT/anyNonFinite.cpp
cpp/RAT/anyNonFinite.h
cpp/RAT/applyBackgroundCorrection.cpp
cpp/RAT/applyBackgroundCorrection.h
cpp/RAT/applyHydration.cpp
cpp/RAT/applyHydration.h
cpp/RAT/asinh.cpp
cpp/RAT/asinh.h
cpp/RAT/asymconvstep.cpp
cpp/RAT/asymconvstep.h
cpp/RAT/blockedSummation.cpp
cpp/RAT/blockedSummation.h
cpp/RAT/boundaryHandling.cpp
cpp/RAT/boundaryHandling.h
cpp/RAT/bsearch.cpp
cpp/RAT/bsearch.h
cpp/RAT/calcEllipsoid.cpp
cpp/RAT/calcEllipsoid.h
cpp/RAT/calcLogLikelihood.cpp
cpp/RAT/calcLogLikelihood.h
cpp/RAT/calcLogPrior.cpp
cpp/RAT/calcLogPrior.h
cpp/RAT/calcProposal.cpp
cpp/RAT/calcProposal.h
cpp/RAT/callCppFunction.cpp
cpp/RAT/callCppFunction.h
cpp/RAT/callReflectivity.cpp
cpp/RAT/callReflectivity.h
cpp/RAT/cat.cpp
cpp/RAT/cat.h
cpp/RAT/chiSquared.cpp
cpp/RAT/chiSquared.h
cpp/RAT/classHandle.hpp
cpp/RAT/coderException.hpp
cpp/RAT/coderFread.cpp
cpp/RAT/coderFread.h
cpp/RAT/coder_array.h
cpp/RAT/coder_bounded_array.h
cpp/RAT/coder_posix_time.c
cpp/RAT/coder_posix_time.h
cpp/RAT/coder_setenv.c
cpp/RAT/coder_setenv.h
cpp/RAT/colon.cpp
cpp/RAT/colon.h
cpp/RAT/combineVectorElements.cpp
cpp/RAT/combineVectorElements.h
cpp/RAT/complexTimes.cpp
cpp/RAT/complexTimes.h
cpp/RAT/computeNormMTridiagonal.cpp
cpp/RAT/computeNormMTridiagonal.h
cpp/RAT/constructBackground.cpp
cpp/RAT/constructBackground.h
cpp/RAT/constructResolution.cpp
cpp/RAT/constructResolution.h
cpp/RAT/coreCustomXYCalculation.cpp
cpp/RAT/coreCustomXYCalculation.h
cpp/RAT/coreLayersCalculation.cpp
cpp/RAT/coreLayersCalculation.h
cpp/RAT/cov.cpp
cpp/RAT/cov.h
cpp/RAT/deopt.cpp
cpp/RAT/deopt.h
cpp/RAT/det.cpp
cpp/RAT/det.h
cpp/RAT/diag.cpp
cpp/RAT/diag.h
cpp/RAT/discretize.cpp
cpp/RAT/discretize.h
cpp/RAT/domainsReflectivity.cpp
cpp/RAT/domainsReflectivity.h
cpp/RAT/drawCR.cpp
cpp/RAT/drawCR.h
cpp/RAT/drawEllipsoidPoints.cpp
cpp/RAT/drawEllipsoidPoints.h
cpp/RAT/drawMCMC.cpp
cpp/RAT/drawMCMC.h
cpp/RAT/drawMultiNest.cpp
cpp/RAT/drawMultiNest.h
cpp/RAT/dylib.hpp
cpp/RAT/eig.cpp
cpp/RAT/eig.h
cpp/RAT/eigHermitianStandard.cpp
cpp/RAT/eigHermitianStandard.h
cpp/RAT/eigRealSkewSymmetricStandard.cpp
cpp/RAT/eigRealSkewSymmetricStandard.h
cpp/RAT/eigSkewHermitianStandard.cpp
cpp/RAT/eigSkewHermitianStandard.h
cpp/RAT/eigStandard.cpp
cpp/RAT/eigStandard.h
cpp/RAT/eml_erfcore.cpp
cpp/RAT/eml_erfcore.h
cpp/RAT/eml_mtimes_helper.cpp
cpp/RAT/eml_mtimes_helper.h
cpp/RAT/eml_rand_mt19937ar.cpp
cpp/RAT/eml_rand_mt19937ar.h
cpp/RAT/eml_rand_mt19937ar_stateful.cpp
cpp/RAT/eml_rand_mt19937ar_stateful.h
cpp/RAT/eml_setop.cpp
cpp/RAT/eml_setop.h
cpp/RAT/eps.cpp
cpp/RAT/eps.h
cpp/RAT/erf.cpp
cpp/RAT/erf.h
cpp/RAT/erfinv.cpp
cpp/RAT/erfinv.h
cpp/RAT/eventHelper.hpp
cpp/RAT/exp.cpp
cpp/RAT/exp.h
cpp/RAT/eye.cpp
cpp/RAT/eye.h
cpp/RAT/fMinSearch.cpp
cpp/RAT/fMinSearch.h
cpp/RAT/fileManager.cpp
cpp/RAT/fileManager.h
cpp/RAT/find.cpp
cpp/RAT/find.h
cpp/RAT/findkn.cpp
cpp/RAT/findkn.h
cpp/RAT/flip.cpp
cpp/RAT/flip.h
cpp/RAT/fread.cpp
cpp/RAT/fread.h
cpp/RAT/gamma.cpp
cpp/RAT/gamma.h
cpp/RAT/gelman.cpp
cpp/RAT/gelman.h
cpp/RAT/getFitNames.cpp
cpp/RAT/getFitNames.h
cpp/RAT/getFittedPriors.cpp
cpp/RAT/getFittedPriors.h
cpp/RAT/getTime.cpp
cpp/RAT/getTime.h
cpp/RAT/getenv.cpp
cpp/RAT/getenv.h
cpp/RAT/groupLayersMod.cpp
cpp/RAT/groupLayersMod.h
cpp/RAT/hasPlotHandler.cpp
cpp/RAT/hasPlotHandler.h
cpp/RAT/ifWhileCond.cpp
cpp/RAT/ifWhileCond.h
cpp/RAT/inEllipsoids.cpp
cpp/RAT/inEllipsoids.h
cpp/RAT/initializeDREAM.cpp
cpp/RAT/initializeDREAM.h
cpp/RAT/interp1.cpp
cpp/RAT/interp1.h
cpp/RAT/isRATStopped.cpp
cpp/RAT/isRATStopped.h
cpp/RAT/ishermitian.cpp
cpp/RAT/ishermitian.h
cpp/RAT/isrow.cpp
cpp/RAT/isrow.h
cpp/RAT/ixamax.cpp
cpp/RAT/ixamax.h
cpp/RAT/kmeans.cpp
cpp/RAT/kmeans.h
cpp/RAT/leftWin.cpp
cpp/RAT/leftWin.h
cpp/RAT/length.cpp
cpp/RAT/length.h
cpp/RAT/linspace.cpp
cpp/RAT/linspace.h
cpp/RAT/log1p.cpp
cpp/RAT/log1p.h
cpp/RAT/log2.cpp
cpp/RAT/log2.h
cpp/RAT/logPlus.cpp
cpp/RAT/logPlus.h
cpp/RAT/lower.cpp
cpp/RAT/lower.h
cpp/RAT/lusolve.cpp
cpp/RAT/lusolve.h
cpp/RAT/makeCell.cpp
cpp/RAT/makeCell.h
cpp/RAT/makeEmptyBayesResultsStruct.cpp
cpp/RAT/makeEmptyBayesResultsStruct.h
cpp/RAT/makeSLDProfile.cpp
cpp/RAT/makeSLDProfile.h
cpp/RAT/makeSimulationRange.cpp
cpp/RAT/makeSimulationRange.h
cpp/RAT/mchol.cpp
cpp/RAT/mchol.h
cpp/RAT/mean.cpp
cpp/RAT/mean.h
cpp/RAT/mergesort.cpp
cpp/RAT/mergesort.h
cpp/RAT/metropolisRule.cpp
cpp/RAT/metropolisRule.h
cpp/RAT/minOrMax.cpp
cpp/RAT/minOrMax.h
cpp/RAT/mod.cpp
cpp/RAT/mod.h
cpp/RAT/mrdivide_helper.cpp
cpp/RAT/mrdivide_helper.h
cpp/RAT/mtimes.cpp
cpp/RAT/mtimes.h
cpp/RAT/multrnd.cpp
cpp/RAT/multrnd.h
cpp/RAT/nest2pos.cpp
cpp/RAT/nest2pos.h
cpp/RAT/nestedSampler.cpp
cpp/RAT/nestedSampler.h
cpp/RAT/nonSingletonDim.cpp
cpp/RAT/nonSingletonDim.h
cpp/RAT/norm.cpp
cpp/RAT/norm.h
cpp/RAT/normalReflectivity.cpp
cpp/RAT/normalReflectivity.h
cpp/RAT/normalize.cpp
cpp/RAT/normalize.h
cpp/RAT/nsIntraFun.cpp
cpp/RAT/nsIntraFun.h
cpp/RAT/nullAssignment.cpp
cpp/RAT/nullAssignment.h
cpp/RAT/optimalEllipsoids.cpp
cpp/RAT/optimalEllipsoids.h
cpp/RAT/percentileConfidenceIntervals.cpp
cpp/RAT/percentileConfidenceIntervals.h
cpp/RAT/prctile.cpp
cpp/RAT/prctile.h
cpp/RAT/processBayes.cpp
cpp/RAT/processBayes.h
cpp/RAT/processCustomFunction.cpp
cpp/RAT/processCustomFunction.h
cpp/RAT/processCustomFunction1.cpp
cpp/RAT/processCustomFunction1.h
cpp/RAT/qrsolve.cpp
cpp/RAT/qrsolve.h
cpp/RAT/rand.cpp
cpp/RAT/rand.h
cpp/RAT/randSample.cpp
cpp/RAT/randSample.h
cpp/RAT/randn.cpp
cpp/RAT/randn.h
cpp/RAT/randperm.cpp
cpp/RAT/randperm.h
cpp/RAT/rcond.cpp
cpp/RAT/rcond.h
cpp/RAT/refPercentileConfidenceIntervals.cpp
cpp/RAT/refPercentileConfidenceIntervals.h
cpp/RAT/reflectivityCalculation.cpp
cpp/RAT/reflectivityCalculation.h
cpp/RAT/relop.cpp
cpp/RAT/relop.h
cpp/RAT/removeOutlier.cpp
cpp/RAT/removeOutlier.h
cpp/RAT/repmat.cpp
cpp/RAT/repmat.h
cpp/RAT/resampleLayers.cpp
cpp/RAT/resampleLayers.h
cpp/RAT/rescaleParameters.cpp
cpp/RAT/rescaleParameters.h
cpp/RAT/reshapeSizeChecks.cpp
cpp/RAT/reshapeSizeChecks.h
cpp/RAT/resolutionPolly.cpp
cpp/RAT/resolutionPolly.h
cpp/RAT/rng.cpp
cpp/RAT/rng.h
cpp/RAT/rtGetInf.cpp
cpp/RAT/rtGetInf.h
cpp/RAT/rtGetNaN.cpp
cpp/RAT/rtGetNaN.h
cpp/RAT/rt_defines.h
cpp/RAT/rt_nonfinite.cpp
cpp/RAT/rt_nonfinite.h
cpp/RAT/rtwtypes.h
cpp/RAT/runDE.cpp
cpp/RAT/runDE.h
cpp/RAT/runDREAM.cpp
cpp/RAT/runDREAM.h
cpp/RAT/runNestedSampler.cpp
cpp/RAT/runNestedSampler.h
cpp/RAT/runSimplex.cpp
cpp/RAT/runSimplex.h
cpp/RAT/setupCoreReflectivityCalculation.cpp
cpp/RAT/setupCoreReflectivityCalculation.h
cpp/RAT/setupDREAM.cpp
cpp/RAT/setupDREAM.h
cpp/RAT/shiftData.cpp
cpp/RAT/shiftData.h
cpp/RAT/simplexIntrafun.cpp
cpp/RAT/simplexIntrafun.h
cpp/RAT/simplexXTransform.cpp
cpp/RAT/simplexXTransform.h
cpp/RAT/sort.cpp
cpp/RAT/sort.h
cpp/RAT/sortAscendLE.cpp
cpp/RAT/sortAscendLE.h
cpp/RAT/sortIdx.cpp
cpp/RAT/sortIdx.h
cpp/RAT/sortLE.cpp
cpp/RAT/sortLE.h
cpp/RAT/sortrows.cpp
cpp/RAT/sortrows.h
cpp/RAT/splitEllipsoid.cpp
cpp/RAT/splitEllipsoid.h
cpp/RAT/sprintf.cpp
cpp/RAT/sprintf.h
cpp/RAT/sqrt.cpp
cpp/RAT/sqrt.h
cpp/RAT/sqrt1.cpp
cpp/RAT/sqrt1.h
cpp/RAT/std.cpp
cpp/RAT/std.h
cpp/RAT/str2double.cpp
cpp/RAT/str2double.h
cpp/RAT/strcmp.cpp
cpp/RAT/strcmp.h
cpp/RAT/strjoin.cpp
cpp/RAT/strjoin.h
cpp/RAT/strlength.cpp
cpp/RAT/strlength.h
cpp/RAT/structConstructorHelper.cpp
cpp/RAT/structConstructorHelper.h
cpp/RAT/sum.cpp
cpp/RAT/sum.h
cpp/RAT/tic.cpp
cpp/RAT/tic.h
cpp/RAT/timeKeeper.cpp
cpp/RAT/timeKeeper.h
cpp/RAT/tmwtypes.h
cpp/RAT/toc.cpp
cpp/RAT/toc.h
cpp/RAT/triggerEvent.cpp
cpp/RAT/triggerEvent.h
cpp/RAT/unpackParams.cpp
cpp/RAT/unpackParams.h
cpp/RAT/unsafeSxfun.cpp
cpp/RAT/unsafeSxfun.h
cpp/RAT/useConstantDim.cpp
cpp/RAT/useConstantDim.h
cpp/RAT/vAllOrAny.cpp
cpp/RAT/vAllOrAny.h
cpp/RAT/validate_print_arguments.cpp
cpp/RAT/validate_print_arguments.h
cpp/RAT/var.cpp
cpp/RAT/var.h
cpp/RAT/varstd.cpp
cpp/RAT/varstd.h
cpp/RAT/xaxpy.cpp
cpp/RAT/xaxpy.h
cpp/RAT/xdladiv.cpp
cpp/RAT/xdladiv.h
cpp/RAT/xdlaev2.cpp
cpp/RAT/xdlaev2.h
cpp/RAT/xdlahqr.cpp
cpp/RAT/xdlahqr.h
cpp/RAT/xdlaln2.cpp
cpp/RAT/xdlaln2.h
cpp/RAT/xdlanv2.cpp
cpp/RAT/xdlanv2.h
cpp/RAT/xdotc.cpp
cpp/RAT/xdotc.h
cpp/RAT/xdtrevc3.cpp
cpp/RAT/xdtrevc3.h
cpp/RAT/xgeev.cpp
cpp/RAT/xgeev.h
cpp/RAT/xgemm.cpp
cpp/RAT/xgemm.h
cpp/RAT/xgemv.cpp
cpp/RAT/xgemv.h
cpp/RAT/xgeqp3.cpp
cpp/RAT/xgeqp3.h
cpp/RAT/xgerc.cpp
cpp/RAT/xgerc.h
cpp/RAT/xgeru.cpp
cpp/RAT/xgeru.h
cpp/RAT/xgetrf.cpp
cpp/RAT/xgetrf.h
cpp/RAT/xnrm2.cpp
cpp/RAT/xnrm2.h
cpp/RAT/xrot.cpp
cpp/RAT/xrot.h
cpp/RAT/xscal.cpp
cpp/RAT/xscal.h
cpp/RAT/xswap.cpp
cpp/RAT/xswap.h
cpp/RAT/xsyheev.cpp
cpp/RAT/xsyheev.h
cpp/RAT/xtrsm.cpp
cpp/RAT/xtrsm.h
cpp/RAT/xtrsv.cpp
cpp/RAT/xtrsv.h
cpp/RAT/xunormqr.cpp
cpp/RAT/xunormqr.h
cpp/RAT/xzgebak.cpp
cpp/RAT/xzgebak.h
cpp/RAT/xzgebal.cpp
cpp/RAT/xzgebal.h
cpp/RAT/xzgehrd.cpp
cpp/RAT/xzgehrd.h
cpp/RAT/xzgeqp3.cpp
cpp/RAT/xzgeqp3.h
cpp/RAT/xzlangeM.cpp
cpp/RAT/xzlangeM.h
cpp/RAT/xzlarf.cpp
cpp/RAT/xzlarf.h
cpp/RAT/xzlarfg.cpp
cpp/RAT/xzlarfg.h
cpp/RAT/xzlartg.cpp
cpp/RAT/xzlartg.h
cpp/RAT/xzlascl.cpp
cpp/RAT/xzlascl.h
cpp/RAT/xzsteqr.cpp
cpp/RAT/xzsteqr.h
cpp/RAT/xzsyheev.cpp
cpp/RAT/xzsyheev.h
cpp/RAT/xzsyhetrd.cpp
cpp/RAT/xzsyhetrd.h
cpp/RAT/xzunghr.cpp
cpp/RAT/xzunghr.h
cpp/RAT/xzungqr.cpp
cpp/RAT/xzungqr.h
cpp/RAT/xzunorgtr.cpp
cpp/RAT/xzunorgtr.h
cpp/RAT/events/eventManager.cpp
cpp/RAT/events/eventManager.h
cpp/RAT/events/eventManagerImpl.hpp
cpp/includes/defines.h
cpp/includes/functions.h
ratapi/__init__.py
ratapi/classlist.py
ratapi/controls.py
ratapi/events.py
ratapi/inputs.py
ratapi/models.py
ratapi/outputs.py
ratapi/project.py
ratapi/run.py
ratapi/wrappers.py
ratapi.egg-info/PKG-INFO
ratapi.egg-info/SOURCES.txt
ratapi.egg-info/dependency_links.txt
ratapi.egg-info/not-zip-safe
ratapi.egg-info/requires.txt
ratapi.egg-info/top_level.txt
ratapi/examples/__init__.py
ratapi/examples/absorption/__init__.py
ratapi/examples/absorption/absorption.py
ratapi/examples/absorption/volume_thiol_bilayer.py
ratapi/examples/convert_rascal_project/Model_IIb.py
ratapi/examples/convert_rascal_project/__init__.py
ratapi/examples/convert_rascal_project/convert_rascal.py
ratapi/examples/data/D2O_spin_down.dat
ratapi/examples/data/D2O_spin_up.dat
ratapi/examples/data/DSPC_D2O.dat
ratapi/examples/data/DSPC_SMW.dat
ratapi/examples/data/H2O_spin_down.dat
ratapi/examples/data/H2O_spin_up.dat
ratapi/examples/data/__init__.py
ratapi/examples/data/c_PLP0016596.dat
ratapi/examples/data/c_PLP0016601.dat
ratapi/examples/data/c_PLP0016607.dat
ratapi/examples/data/d2o_background_data.dat
ratapi/examples/domains/__init__.py
ratapi/examples/domains/alloy_domains.py
ratapi/examples/domains/domains_XY_model.py
ratapi/examples/domains/domains_custom_XY.py
ratapi/examples/domains/domains_custom_layers.py
ratapi/examples/domains/domains_standard_layers.py
ratapi/examples/languages/__init__.py
ratapi/examples/languages/custom_bilayer.py
ratapi/examples/languages/run_custom_file_languages.py
ratapi/examples/languages/setup_problem.py
ratapi/examples/normal_reflectivity/DSPC_custom_XY.py
ratapi/examples/normal_reflectivity/DSPC_custom_layers.py
ratapi/examples/normal_reflectivity/DSPC_data_background.py
ratapi/examples/normal_reflectivity/DSPC_function_background.py
ratapi/examples/normal_reflectivity/DSPC_standard_layers.py
ratapi/examples/normal_reflectivity/__init__.py
ratapi/examples/normal_reflectivity/background_function.py
ratapi/examples/normal_reflectivity/custom_XY_DSPC.py
ratapi/examples/normal_reflectivity/custom_bilayer_DSPC.py
ratapi/utils/__init__.py
ratapi/utils/convert.py
ratapi/utils/custom_errors.py
ratapi/utils/enums.py
ratapi/utils/orso.py
ratapi/utils/plotting.py