.git-blame-ignore-revs
.gitignore
.python-version
CONTRIBUTING.md
LICENSE
README.md
USAGE.ipynb
mkdocs.yml
pyproject.toml
uv.lock
.github/workflows/code-quality.yml
.github/workflows/matrix-test.yml
.github/workflows/release.yml
.vscode/extensions.json
.vscode/settings.json
docs/geography_scope.md
docs/geography_us_census.md
docs/index.md
docs/kit.md
docs/scripts.js
docs/styles.css
docs/time.md
docs/_examples/adrio_adrio_InspectResult.md
docs/_examples/adrio_processing_DataPipeline.md
docs/_examples/adrio_soda.md
docs/_examples/compartment_model_CompartmentModel.md
docs/_examples/time_TimeFrame.md
docs/overrides/main.html
epymorph/__init__.py
epymorph/__main__.py
epymorph/attribute.py
epymorph/cache.py
epymorph/compartment_model.py
epymorph/data_shape.py
epymorph/data_type.py
epymorph/data_usage.py
epymorph/database.py
epymorph/error.py
epymorph/event.py
epymorph/initializer.py
epymorph/kit.py
epymorph/movement_model.py
epymorph/params.py
epymorph/py.typed
epymorph/rume.py
epymorph/settings.py
epymorph/simulation.py
epymorph/strata.py
epymorph/sympy_shim.py
epymorph/time.py
epymorph/util.py
epymorph.egg-info/PKG-INFO
epymorph.egg-info/SOURCES.txt
epymorph.egg-info/dependency_links.txt
epymorph.egg-info/entry_points.txt
epymorph.egg-info/requires.txt
epymorph.egg-info/top_level.txt
epymorph/adrio/__init__.py
epymorph/adrio/acs5.py
epymorph/adrio/adrio.py
epymorph/adrio/cdc.py
epymorph/adrio/commuting_flows.py
epymorph/adrio/csv.py
epymorph/adrio/humidity.py
epymorph/adrio/lodes.py
epymorph/adrio/numpy.py
epymorph/adrio/prism.py
epymorph/adrio/processing.py
epymorph/adrio/soda.py
epymorph/adrio/us_tiger.py
epymorph/adrio/validation.py
epymorph/cli/__init__.py
epymorph/cli/cache.py
epymorph/cli/main.py
epymorph/data/__init__.py
epymorph/data/pei.py
epymorph/data/ipm/__init__.py
epymorph/data/ipm/no.py
epymorph/data/ipm/pei.py
epymorph/data/ipm/seirs.py
epymorph/data/ipm/sirh.py
epymorph/data/ipm/sirs.py
epymorph/data/ipm/sparsemod.py
epymorph/data/mm/__init__.py
epymorph/data/mm/centroids.py
epymorph/data/mm/flat.py
epymorph/data/mm/icecube.py
epymorph/data/mm/no.py
epymorph/data/mm/pei.py
epymorph/data/mm/sparsemod.py
epymorph/geography/__init__.py
epymorph/geography/custom.py
epymorph/geography/scope.py
epymorph/geography/us_census.py
epymorph/geography/us_geography.py
epymorph/geography/us_tiger.py
epymorph/log/__init__.py
epymorph/log/file.py
epymorph/log/messaging.py
epymorph/log/movement.py
epymorph/parameter_fitting/__init__.py
epymorph/parameter_fitting/distribution.py
epymorph/parameter_fitting/dynamics.py
epymorph/parameter_fitting/likelihood.py
epymorph/parameter_fitting/output.py
epymorph/parameter_fitting/particlefilter_simulation.py
epymorph/parameter_fitting/perturbation.py
epymorph/parameter_fitting/filter/__init__.py
epymorph/parameter_fitting/filter/base_filter.py
epymorph/parameter_fitting/filter/particle.py
epymorph/parameter_fitting/filter/particle_filter.py
epymorph/parameter_fitting/utils/__init__.py
epymorph/parameter_fitting/utils/data_loader.py
epymorph/parameter_fitting/utils/epymorph_simulation.py
epymorph/parameter_fitting/utils/observations.py
epymorph/parameter_fitting/utils/parameter_estimation.py
epymorph/parameter_fitting/utils/params_perturb.py
epymorph/parameter_fitting/utils/particle_initializer.py
epymorph/parameter_fitting/utils/resampler.py
epymorph/parameter_fitting/utils/utils.py
epymorph/simulator/__init__.py
epymorph/simulator/world.py
epymorph/simulator/world_list.py
epymorph/simulator/basic/__init__.py
epymorph/simulator/basic/basic_simulator.py
epymorph/simulator/basic/ipm_exec.py
epymorph/simulator/basic/mm_exec.py
epymorph/simulator/basic/output.py
epymorph/tools/__init__.py
epymorph/tools/data.py
epymorph/tools/ipm_diagram.py
epymorph/tools/out_map.py
epymorph/tools/out_plot.py
epymorph/tools/out_table.py
scripts/README.md
scripts/data_exports.py
scripts/mkdocs_generate_api_pages.py
scripts/setup-epymorph-monsoon.sh
tests/conftest.py
tests/fast/compartment_model_test.py
tests/fast/data_shape_test.py
tests/fast/data_test.py
tests/fast/data_type_test.py
tests/fast/data_usage_test.py
tests/fast/database_test.py
tests/fast/initializer_test.py
tests/fast/movement_model_test.py
tests/fast/params_test.py
tests/fast/rume_test.py
tests/fast/simulation_test.py
tests/fast/time_test.py
tests/fast/util_test.py
tests/fast/adrio/acs5_test.py
tests/fast/adrio/adrios_test.py
tests/fast/adrio/humidity_test.py
tests/fast/adrio/processing_test.py
tests/fast/geography/us_census_test.py
tests/fast/geography/us_geography_test.py
tests/fast/simulator/basic_simulator_test.py
tests/fast/simulator/ipm_exec_test.py
tests/fast/simulator/world_list_test.py
tests/fast/tools/data_test.py
tests/slow/adrio/acs5_test.py
tests/slow/adrio/cdc_test.py
tests/slow/adrio/commuting_flows_test.py
tests/slow/adrio/csv_test.py
tests/slow/adrio/lodes_test.py
tests/slow/adrio/numpy_test.py
tests/slow/adrio/prism_test.py
tests/slow/adrio/us_tiger_test.py
tests/slow/adrio/cassettes/acs5_test/test_average_household_size.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_dissimilarity_index.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_gini_index.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_median_age.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_median_income.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_by_age.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_by_age_table.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_by_race.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_cbg.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_county.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_state.yaml.gz
tests/slow/adrio/cassettes/acs5_test/test_population_tract.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_county_deaths.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_county_deaths_large_request_counties.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_county_deaths_large_request_states.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_county_cases.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_county_cases_large_request.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_facility_hospitalization.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_facility_hospitalization_age_groups.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_state_hospitalization.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_vaccination.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_vaccination_booster.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_vaccination_large_request_counties.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_covid_vaccination_large_request_states.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-0 to 4].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-18 to 49].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-5 to 17].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-50 to 64].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-65 to 74].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-75 and above].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Covid-Unknown].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-0 to 4].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-18 to 49].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-5 to 17].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-50 to 64].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-65 to 74].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-75 and above].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[Influenza-Unknown].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-0 to 4].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-18 to 49].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-5 to 17].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-50 to 64].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-65 to 74].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-75 and above].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_admissions_matrix[RSV-Unknown].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[Covid-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[Covid-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[Covid-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[Influenza-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[Influenza-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[Influenza-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[RSV-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[RSV-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_icu_matrix[RSV-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[Covid-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[Covid-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[Covid-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[Influenza-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[Influenza-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[Influenza-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[RSV-Adult].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[RSV-Pediatric].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_current_state_hospitalization_matrix[RSV-Total].yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_influenza_facility_hospitalization.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_influenza_facility_hospitalization_large_request.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_influenza_state_hospitalization.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_influenza_state_hospitalization_large_request.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_state_deaths.yaml.gz
tests/slow/adrio/cassettes/cdc_test/test_state_deaths_large_request.yaml.gz
tests/slow/geography/us_tiger_test.py
tests/slow/tools/ipm_diagram_test.py