#1505404186
cd examples/
#1505404188
ll
#1505404229
touch __init__.py
#1505404235
ll ../project_quickstart/
#1505404260
mkdir legacy
#1505404292
mv ../project_quickstart/*refactor legacy/
#1505404296
ll
#1505404312
mv legacy ../
#1505404314
ll
#1505404340
cd examples/
#1505404342
ll
#1505404895
rename -s template pq_example *
#1505404897
ll
#1505404908
ll pipeline_pq_example/
#1505405105
ll
#1505406278
cd -
#1505406300
cd examples/
#1505406301
ll
#1505407231
vimdiff plot_pq_example_mtcars.R plot_pq_example_pandas.R 
#1505407274
vim -O2 plot_pq_example_mtcars.R plot_pq_example_pandas.R 
#1505407464
ll
#1505408917
open pq_example_mtcars.R 
#1505408938
open plot_pq_example_mtcars.R 
#1505411073
ll
#1505411130
less pq_example.R
#1505411136
ll
#1505411153
vim plot_pq_example.py 
#1505411193
ll
#1505411210
vim pq_example.py 
#1505411269
vim pq_example_mtcars.R 
#1505411305
ll
#1505412762
cd examples/
#1505412762
ll
#1505412775
ls -1
#1505412816
cp ../templates/script_templates/version.py .
#1505412826
ls -1 ../templates/script_templates/
#1505412828
ls -1
#1505412901
ll
#1505474379
cd examples/
#1505474380
ll
#1505475069
vim svgutils_pq_example.py 
#1505481767
ll
#1505481770
vim svgutils_pq_example.py 
#1505481990
ll
#1505482002
ls -1
#1505482011
rm -f __init__.py 
#1505482027
ll
#1505482857
grep -rnw boxplot .
#1505483521
vim -O2 plot_pq_example_mtcars.R pq_example_mtcars.R 
#1505483730
open pq_example_mtcars.R 
#1505484096
vim svgutils_pq_example.py 
#1505487296
ll
#1505497287
..
#1505497289
ll
#1505497304
vim plot_pq_example_pandas.R 
#1505497325
vim plot_pq_example_mtcars.R 
#1505497341
vim plot_pq_example_pandas.R 
#1505497994
cd templates/examples/
#1505497995
ll
#1505738086
vim svgutils_pq_example.py 
#1505746887
ll
#1505844313
..
#1505917490
cd examples/
#1505917512
ll
#1505917524
vim pipeline_pq_example/pipeline_pq_example.py 
#1505926060
ll
#1505926076
chmod -R u+x *py
#1505926078
ll
#1505926087
chmod -R u+x *R
#1505926088
ll
#1505926098
ll pipeline_pq_example/
#1505926129
ll
#1505926445
sed -i '1s/^/\#\!\/usr\/bin\/env python3 \n/' svgutils_pq_example.py 
#1505926475
sed -i '1s/^/"#!/usr/bin/env python3 \n/"' svgutils_pq_example.py 
#1505926501
sed -i '1s/^/#!\/usr\/bin\/env python3 \n/' svgutils_pq_example.py 
#1505926555
sed -i '1s/^/#!\\/usr\\/bin\\/env python3 \n/' svgutils_pq_example.py 
#1505926620
head svgutils_pq_example.py 
#1505926714
sed -i '1s/#!/usr/bin/env python3 \n/' svgutils_pq_example.py 
#1505926731
sed -i '1s/#!\\/usr\\/bin\\/env python3 \n/' svgutils_pq_example.py 
#1505926757
sed -i '1s/test \n/' svgutils_pq_example.py 
#1505926767
sed -i '1s/^/test \n/' svgutils_pq_example.py 
#1505926783
sed -i '1s/^/<test> \n/' svgutils_pq_example.py 
#1505926795
sed -i '1s/^/<test> \n/' $svgutils_pq_example.py 
#1505926804
sed -i '1s/^/<test> \n/' svgutils_pq_example.py
#1505926818
sed -i '1s/^/"test \n"/' svgutils_pq_example.py
#1505926824
cat svgutils_pq_example.py 
#1505926827
head svgutils_pq_example.py 
#1505927000
sed -i '1i i#!/usr/bin/env python3' 
#1505927009
touch test.test
#1505927015
sed -i '1i i#!/usr/bin/env python3' test.test 
#1505927032
sed -i '1i ipython3' test.test 
#1505927125
sed -i '1i python3 \n' test.test 
#1505927135
sed -i '1i python3 ' test.test 
#1505927139
cat test.test 
#1505927144
vim test.test 
#1505927151
sed -i '1i python3 ' test.test 
#1505927161
sed '1i python3 ' test.test 
#1505927174
sed '1i \python3 ' test.test 
#1505927179
sed '1i \python3' test.test 
#1505927186
sed '1i\ python3' test.test 
#1505927191
sed '1i\python3' test.test 
#1505927196
sed '1i\python3\' test.test 
#1505927214
sed '1 i\python3' test.test 
#1505927243
sed -i '1 i\python3' test.test 
#1505927248
cat test.test 
#1505927277
sed '1 i\python3' test.test 
#1505927281
sed '1i python3' test.test 
#1505927291
sed '1i\python3' test.test 
#1505927301
sed '1i\python3'
#1505927305
sed '1i\python3' > test.test 
#1505927432
sed -e '1i\
#!/usr/bin/env python3
' <test.test
#1505927478
cat test.test 
#1505931017
vim svgutils_pq_example.py 
#1505931023
ll
#1505931040
./svgutils_pq_example.py 
#1505931055
rm -f test.test 
#1505931082
vim -O2 plot_pq_example.py pq_example.py 
#1505931093
ll
#1505931222
which Rscript 
#1505931253
vim -O2 pq_example_mtcars.R plot_pq_example_pandas.R 
#1505931285
vim -O2 plot_pq_example_mtcars.R pq_example.R
#1505931302
vim pipeline_pq_example/pipeline_pq_example.py 
#1505931312
head plot_pq_example.py 
#1505931318
vim pipeline_pq_example/pipeline_pq_example.py 
#1505931327
ll pipeline_pq_example/
#1505931330
ll pipeline_pq_example/configuration_pipeline_pq_example/
#1505931339
head pipeline_pq_example/configuration_pipeline_pq_example/conf.py 
#1505931342
q
#1505931408
head plot_pq_example_mtcars.R 
#1505932575
cd examples/
#1505932576
ll
#1505932360
vim pipeline_pq_example/pipeline_pq_example.py 
#1505979621
cd templates/examples/
#1505979622
ll
#1505979629
cat module_pq_example.py 
#1505979638
rm -f module_pq_example.py 
#1505979640
ll
#1505979646
ll logging.R 
#1505979649
cat logging.R 
#1505979662
cat version.py 
#1506505467
cd templates/examples/
#1506505468
ll
#1506505559
pwd
#1506506341
ll ../..
#1506943313
cd templates/examples/
#1506943314
ll
#1506943324
vim pq_example.py 
#1506954576
cd templates/examples/
#1506954582
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1507047397
..
#1507047398
ll
#1507047434
grep -rnw . stargazer
#1507047441
grep -rnw stargazer .
#1507047456
vim pq_example.R
#1507047618
open pq_example.R
#1507047935
vim pq_example_mtcars.R
#1507049727
vim pq_example.R
#1507049756
vim pq_example_mtcars.R
#1507049983
vim pq_example.R
#1507050144
ll
#1507051408
vim pq_example.R
#1507051425
vim pq_example_mtcars.R
#1507056026
ll
#1507056031
head pq_example_mtcars.R 
#1507056036
cat pq_example_mtcars.R 
#1507056064
..
#1507056065
ll
#1507110497
cd templates/examples/
#1507110498
ll
#1507110506
grep -rnw ggtheme .
#1507110510
grep -rnw theme .
#1507110539
vim -O2 plot_pq_example_mtcars.R ggtheme.R
#1507115402
ll
#1507115416
chmod u+x examples.sh 
#1507115417
ll
#1507115432
chmod u+x ggtheme.R 
#1507116397
cat examples.sh 
#1507120225
..
#1507120226
ll
#1507120229
vim svgutils_pq_example.py 
#1507129128
cd templates/examples/
#1507129129
ll
#1507129137
ln -sf ~/Documents/github.dir/AntonioJBT/project_quickstart/templates/examples/* .
#1507129139
ll
#1507129146
ll pipeline_pq_example/
#1507129181
ln -sf ~/Documents/github.dir/AntonioJBT/project_quickstart/templates/examples/pipeline_pq_example/* pipeline_pq_example/
#1507206577
cd templates/examples/
#1507206578
ll
#1507206856
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1507217595
pwd
#1507217603
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1507218024
eval pythonw
#1507218032
man evak
#1507218034
man eval
#1507218950
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1507220842
ll
#1507220849
ll *
#1507221536
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1507206592
vim pipeline_pq_example/pipeline_pq_example.py 
#1507570332
cd templates/examples/
#1507570333
ll
#1507570355
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1507570395
vim pipeline_pq_example/configuration_pipeline_pq_example/report_pipeline_pq_example.rst 
#1507574306
vim svgutils_pq_example.py 
#1507574363
vim examples.sh 
#1507574856
vim pipeline_pq_example/configuration_pipeline_pq_example/report_pipeline_pq_example.rst 
#1507574931
vim svgutils_pq_example.py 
#1507575201
ll
#1507575210
ll pipeline_pq_example/
#1507575214
ll pipeline_pq_example/configuration_pipeline_pq_example/
#1507615410
ll
#1507615414
ll pipeline_pq_example/
#1507615418
ll pipeline_pq_example/configuration_pipeline_pq_example/
#1507637612
vim examples.sh 
#1507641285
man apt-get
#1507642634
cd -
#1507645005
vim -O2 pipeline_pq_example/pipeline_pq_example.py ../script_templates/pipeline_template/pipeline_template.py 
#1507645996
vim svgutils_pq_example.py 
#1507646157
ll
#1507646172
mv external_requirements.rst requirements.sh
#1507646173
vim requirements.sh 
#1507646891
ll
#1507646901
chmod u+x requirements.sh 
#1507647184
vim requirements.sh 
#1507649221
pwd
#1507649260
cat requirements.sh 
#1507649266
vim requirements.sh 
#1507649282
cat requirements.sh 
#1507649290
vim requirements.sh 
#1507649772
cat requirements.sh 
#1507649782
vim requirements.sh 
#1507651887
mv requirements.sh requirements_pq_example.sh 
#1507651895
mv requirements_pq_example.sh ../../
#1507661457
cd templates/examples/
#1507661464
vim -O2 pipeline_pq_example/pipeline_pq_example.py ../script_templates/pipeline_template/pipeline_template.py 
#1507730319
cd templates/examples/
#1507730319
ll
#1507730333
mv ../../Dockerfile_pq_example_* .
#1507730346
cat > README_dockerfiles.rst 
#1507730416
ll
#1507730420
vim README_dockerfiles.rst 
#1507737260
cd AntonioJBT/project_quickstart/templates/examples/
#1507737260
ll
#1507737390
cd examples/
#1507737392
ll
#1507737420
cp ggtheme.R ~/Documents/quickstart_projects/BEST_D_molecular.p_q/code/BEST_D_molecular/utilities/ 
#1509046432
cd AntonioJBT/project_quickstart/templates/examples/
#1509046435
vim svgutils_pq_example.py 
#1509650626
cd examples/
#1509650627
ll
#1510252063
cd templates/examples/
#1510252063
ll
#1510252068
vim Dockerfile_pq_example_ubuntu 
#1510252092
cp Dockerfile_pq_example_ubuntu ~/Documents/github.dir/EpiCompBio/pipeline_QTL/
#1510744586
cd AntonioJBT/project_quickstart/templates/examples/
#1510744588
ll
#1510779798
cd AntonioJBT/project_quickstart/templates/examples/
#1510779801
ll
#1510779812
grep -r project_dir pipeline_pq_example/
#1510779817
grep -r project_dir pipeline_pq_example/configuration_pipeline_pq_example/
#1510779821
grep -rn project_dir pipeline_pq_example/configuration_pipeline_pq_example/
#1510779828
grep -rn project_dir pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1510779839
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1510779852
vim pipeline_pq_example/pipeline_pq_example.py 
#1510779860
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1510864557
cd AntonioJBT/project_quickstart/templates/examples/
#1510864558
ll
#1510864565
vim pipeline_pq_example/configuration_pipeline_pq_example/pipeline_pq_example.ini 
#1510864605
grep -rn project_dir .
#1510864608
grep -rn project_ .
#1510864632
grep -rn project_scripts .
#1511188579
cd AntonioJBT/project_quickstart/templates/examples/
#1511188580
ll
#1512143577
cd AntonioJBT/project_quickstart/templates/examples/
#1512143578
ll
#1512143595
vim pq_example.py 
#1515427637
cd templates/examples/
#1515427638
ll
#1515429620
cd AntonioJBT/project_quickstart/templates/examples/
#1515429621
ll
#1515429629
vim examples.sh 
#1516288906
cd AntonioJBT/project_quickstart/templates/examples/
#1516288906
ll
#1516288911
vim examples.sh 
#1528198327
..
#1528198328
ll
#1529421383
cd templates/examples/
#1529421384
ll
#1529421390
vim Dockerfile_pq_example_ubuntu 
#1529668280
cd examples/
#1529668281
ll
#1529669141
..
#1529669311
..
#1529689977
cd templates/examples/
#1529954093
..
#1529957413
cd AntonioJBT/project_quickstart/templates/examples/
#1531480567
cd ./templates/examples/
#1531480568
ll
#1531480575
rm -f README_dockerfiles.rst 
#1542041040
cd examples/
#1542041043
flake8
#1542041067
ll
#1548080345
cd templates/examples/
#1548080346
ll
#1548080358
ll pipeline_pq_example/configuration/
#1548084634
cd examples/
#1548084635
ll
#1548084644
ll pipeline_pq_example/
#1548084652
ll
#1548084677
grep 0r . -e data
#1548084682
grep -r . -e data
#1548084687
grep -r . -e dataframe
#1548084929
grep -r . -e mydataframe
#1548084933
grep -r . -e my_dataframe
#1548085144
ll
#1548086521
cd examples/
#1548086522
ll
#1548095709
cd templates/examples/
#1548095710
ll
#1548097805
..
#1548435066
..
