Metadata-Version: 2.1
Name: msiimport
Version: 0.1.0
Summary: Access analyze75 formatted mass spec images
Home-page: https://github.com/STTARR/msiimport
Author: Jade Bilkey
Author-email: python@thefumon.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Description-Content-Type: text/markdown
Requires-Dist: numpy
Requires-Dist: nibabel

# msiimport

## Description

A convenience package for accessing mass spec image data stored as analyze75 formated files (.hdr, .img, .t2m).

If there is interest in further functionality, please create an issue to ask for features or filetype compatibility (imzML, ...).

No filetype writing is planned at this time.

## Installation

Install msiimport with:

`pip install msiimport`

## Example

```python
# Get a 2D ndarray of data near an m/z peak

from msiimport import analyze75 as ana

#...

data = ana(path_to_dot_hdr)
image = data.getImage(peakmz=303.23, tolerance=0.4)

```

