LICENSE
README.md
setup.py
adapt/__init__.py
adapt/alignment.py
adapt/coverage_analysis.py
adapt/guide_search.py
adapt/primer_search.py
adapt/target_search.py
adapt/models/classify/cas13a/v1_0/saved_model.pb
adapt/models/classify/cas13a/v1_0/assets.extra/context_nt.arg
adapt/models/classify/cas13a/v1_0/assets.extra/default_threshold.arg
adapt/models/classify/cas13a/v1_0/assets.extra/guide_length.arg
adapt/models/classify/cas13a/v1_0/variables/variables.data-00000-of-00001
adapt/models/classify/cas13a/v1_0/variables/variables.index
adapt/models/regress/cas13a/v1_0/saved_model.pb
adapt/models/regress/cas13a/v1_0/assets.extra/context_nt.arg
adapt/models/regress/cas13a/v1_0/assets.extra/default_threshold.arg
adapt/models/regress/cas13a/v1_0/assets.extra/guide_length.arg
adapt/models/regress/cas13a/v1_0/variables/variables.data-00000-of-00001
adapt/models/regress/cas13a/v1_0/variables/variables.index
adapt/prepare/__init__.py
adapt/prepare/align.py
adapt/prepare/cluster.py
adapt/prepare/ncbi_neighbors.py
adapt/prepare/prepare_alignment.py
adapt/prepare/tests/__init__.py
adapt/prepare/tests/test_align.py
adapt/prepare/tests/test_cluster.py
adapt/prepare/tests/test_ncbi_neighbors.py
adapt/specificity/__init__.py
adapt/specificity/alignment_query.py
adapt/specificity/kmer_leaf.py
adapt/specificity/kmer_shard.py
adapt/specificity/tests/__init__.py
adapt/specificity/tests/test_alignment_query.py
adapt/specificity/tests/test_kmer_leaf.py
adapt/specificity/tests/test_kmer_shard.py
adapt/tests/__init__.py
adapt/tests/test_alignment.py
adapt/tests/test_coverage_analysis.py
adapt/tests/test_guide_search.py
adapt/tests/test_primer_search.py
adapt/tests/test_target_search.py
adapt/utils/__init__.py
adapt/utils/formatting.py
adapt/utils/guide.py
adapt/utils/index_compress.py
adapt/utils/log.py
adapt/utils/lsh.py
adapt/utils/mutate.py
adapt/utils/predict_activity.py
adapt/utils/seq_io.py
adapt/utils/trie.py
adapt/utils/version.py
adapt/utils/year_cover.py
adapt/utils/tests/__init__.py
adapt/utils/tests/test_formatting.py
adapt/utils/tests/test_guide.py
adapt/utils/tests/test_index_compress.py
adapt/utils/tests/test_lsh.py
adapt/utils/tests/test_mutate.py
adapt/utils/tests/test_predict_activity.py
adapt/utils/tests/test_seq_io.py
adapt/utils/tests/test_trie.py
adapt/utils/tests/test_year_cover.py
adapt_diagnostics.egg-info/PKG-INFO
adapt_diagnostics.egg-info/SOURCES.txt
adapt_diagnostics.egg-info/dependency_links.txt
adapt_diagnostics.egg-info/requires.txt
adapt_diagnostics.egg-info/top_level.txt
bin/__init__.py
bin/analyze_coverage.py
bin/design.py
bin/design_naively.py
bin/pick_test_targets.py
bin/tests/__init__.py
bin/tests/test_design.py
bin/tests/test_design_naively.py