Metadata-Version: 1.0
Name: riptide
Version: 0.6
Summary: Reaction Inclusion by Parsimony and Transcript Distribution (RIPTiDe)
Home-page: https://github.com/mjenior/riptide
Author: Matt Jenior
Author-email: mattjenior@gmail.com
License: MIT
Description: =======
        RIPTiDe
        =======
        Reaction Inclusion by Parsimonious usage and Transcript Distribution
        
        
        # Please cite when using:
        Jenior ML and Papin JA. (2018) RIPTiDe: Metabolic model contextualization through exploration 
        of mutliple transcription and flux minimization levels. BioRxiv. DOI
        
        # Dependencies
        cobrapy (>=version 0.14)
        
        symengine
        
        # Example usage:
        my_model = cobra.io.read_sbml_model('my_model.sbml')
        
        transcript_abundances = read_transcription_file('reads_to_genes.tsv', replicates=True)
        
        contextualized_model, flux_samples = riptide(my_model, transcript_abundances)
        
Platform: UNKNOWN
