=== Loading Fastr execution script  ===
Using python 3.7.3 (default, Apr 24 2019, 10:44:57) 
[GCC 5.4.0 20160609] loaded from /home/martijn/Documents/WORC3/bin/python
[INFO] executionscript:0148 >> ----- Execution script -----

[INFO] executionscript:0160 >> Loading pickled command from file
[INFO] executionscript:0164 >> Finished loading pickle in 0.390082 seconds
[INFO] executionscript:0176 >> Received command: <Job
  id=WORC_Example_STWStrategyHN_Multiclass___plot_ranked_posteriors___all
  tool=worc/PlotRankedScores:1.0 1.0
  tmpdir=vfs://home/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/>

[INFO] executionscript:0055 >> Using Python 3.7.3 (default, Apr 24 2019, 10:44:57) 
[GCC 5.4.0 20160609]
[INFO] executionscript:0056 >> FASTR loaded from /home/martijn/Documents/WORC3/lib/python3.7/site-packages/fastr/__init__.py
[INFO] executionscript:0057 >> version: 3.2.3_tags/3.2.3^0_2ed88fe2
[INFO] executionscript:0058 >> Start time: 2021-07-03 15:31:52.350649
[INFO] executionscript:0061 >> Job log path: /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/__fastr_result__.yaml
[INFO] executionscript:0064 >> Running job WORC_Example_STWStrategyHN_Multiclass___plot_ranked_posteriors___all
  command: worc/PlotRankedScores:1.0 v1.0
  arguments: {'estimator': <SampleItem index=(0), id=all>, 'pinfo': <SampleItem index=(0), id=id_0>, 'ensemble': <SampleItem index=(0), id=id_0>, 'label_type': <SampleItem index=(0), id=id_0>, 'scores': <SampleItem index=(0), id=id_0>, 'images': <SampleItem index=(0), id=__EMPTY__>, 'segmentations': <SampleItem index=(0), id=__EMPTY__>}
  outputs: {'output_zip': {'id': 'output_zip', 'cardinality': 1, 'datatype': 'ZipFile', 'requested': True}, 'output_csv': {'id': 'output_csv', 'cardinality': 1, 'datatype': 'CSVFile', 'requested': True}}

[INFO] executionscript:0075 >> No old result, executing job
[INFO] basepluginmanager:0078 >> Could not load plugin file /home/martijn/Documents/WORC3/lib/python3.7/site-packages/fastr/resources/plugins/reportingplugins/elasticsearchreporter.py
FastrOptionalModuleNotAvailableError from /home/martijn/Documents/WORC3/lib/python3.7/site-packages/fastr/resources/plugins/reportingplugins/elasticsearchreporter.py line 46: Could not import the required elasticsearch for this plugin
[INFO] executionscript:0084 >> DRMAA info: {'jobid': None, 'taskid': None, 'jobname': None}
[INFO] executionscript:0086 >> Writing intermediate job info to: /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/__fastr_result__.yaml
[INFO]       job:0767 >> Set current directory to job output dir /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all
[INFO]       job:0782 >> Start executing tool
[INFO]       job:0786 >> Finished creating payload in 0.000683 seconds
[INFO]       job:0789 >> Start executing tool
[INFO] localbinarytarget:0154 >> Changing bin/
[INFO]      tool:0387 >> Target is <Plugin: LocalBinaryTarget>
[INFO]      tool:0396 >> Using payload: {'inputs': {'estimator': (<HDF5: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/classify/all/classification_0.hdf5'>,), 'pinfo': (<PatientInfoFile: '/home/martijn/git/WORCTutorial/Data/Examplefiles/pinfo_HN.csv'>,), 'ensemble': (<String: '1'>,), 'label_type': (<String: 'imaginary_label_1, complement_label_1'>,), 'scores': (<String: 'posteriors'>,), 'images': (), 'segmentations': ()}, 'outputs': {'output_zip': (<ZipFile: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_zip_0.zip'>,), 'output_csv': (<CSVFile: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_csv_0.csv'>,)}}
[INFO] localbinarytarget:0202 >> Adding extra PATH: ['/home/martijn/git/WORC/WORC/resources/fastr_tools/worc/bin']
[INFO] fastrinterface:0469 >> Execution payload: {'inputs': {'estimator': (<HDF5: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/classify/all/classification_0.hdf5'>,), 'pinfo': (<PatientInfoFile: '/home/martijn/git/WORCTutorial/Data/Examplefiles/pinfo_HN.csv'>,), 'ensemble': (<String: '1'>,), 'label_type': (<String: 'imaginary_label_1, complement_label_1'>,), 'scores': (<String: 'posteriors'>,), 'images': (), 'segmentations': ()}, 'outputs': {'output_zip': (<ZipFile: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_zip_0.zip'>,), 'output_csv': (<CSVFile: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_csv_0.csv'>,)}}
[INFO] fastrinterface:0566 >> Adding (<HDF5: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/classify/all/classification_0.hdf5'>,) to argument list based on <fastrinterface.InputParameterDescription object at 0x7f33104f4128>
[INFO] fastrinterface:0566 >> Adding (<ZipFile: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_zip_0.zip'>,) to argument list based on <fastrinterface.OutputParameterDescription object at 0x7f331050e5c0>
[INFO] fastrinterface:0566 >> Adding (<CSVFile: '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_csv_0.csv'>,) to argument list based on <fastrinterface.OutputParameterDescription object at 0x7f331050e358>
[INFO] fastrinterface:0566 >> Adding (<PatientInfoFile: '/home/martijn/git/WORCTutorial/Data/Examplefiles/pinfo_HN.csv'>,) to argument list based on <fastrinterface.InputParameterDescription object at 0x7f33104f42e8>
[INFO] fastrinterface:0566 >> Adding (<String: '1'>,) to argument list based on <fastrinterface.InputParameterDescription object at 0x7f331050e550>
[INFO] fastrinterface:0566 >> Adding (<String: 'imaginary_label_1, complement_label_1'>,) to argument list based on <fastrinterface.InputParameterDescription object at 0x7f331050e588>
[INFO] fastrinterface:0566 >> Adding (<String: 'posteriors'>,) to argument list based on <fastrinterface.InputParameterDescription object at 0x7f331050efd0>
[INFO] fastrinterface:0566 >> Adding () to argument list based on <fastrinterface.InputParameterDescription object at 0x7f331050eb70>
[INFO] fastrinterface:0566 >> Adding () to argument list based on <fastrinterface.InputParameterDescription object at 0x7f331050e128>
[INFO] localbinarytarget:0261 >> Options: ['/home/martijn/git/WORC/WORC/resources/fastr_tools/worc/bin']
[INFO]    target:0184 >> Calling command arguments: ['python', '/home/martijn/git/WORC/WORC/resources/fastr_tools/worc/bin/PlotRankedScores.py', '--estimator', '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/classify/all/classification_0.hdf5', '--output_zip', '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_zip_0.zip', '--output_csv', '/home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_csv_0.csv', '--pinfo', '/home/martijn/git/WORCTutorial/Data/Examplefiles/pinfo_HN.csv', '--ensemble', '1', '--label_type', 'imaginary_label_1, complement_label_1', '--scores', 'posteriors']
[INFO]    target:0188 >> Calling command: python /home/martijn/git/WORC/WORC/resources/fastr_tools/worc/bin/PlotRankedScores.py --estimator /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/classify/all/classification_0.hdf5 --output_zip /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_zip_0.zip --output_csv /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/output_csv_0.csv --pinfo /home/martijn/git/WORCTutorial/Data/Examplefiles/pinfo_HN.csv --ensemble 1 --label_type 'imaginary_label_1, complement_label_1' --scores posteriors
[INFO] fastrinterface:0476 >> Collecting results
[INFO]       job:0793 >> Finished executing tool in 3.020144 seconds
[INFO]       job:0813 >> Start translating results tool
[INFO]       job:0817 >> Finished translating results in 0.000428 seconds
[INFO]       job:0823 >> Resetting current directory to /home/martijn/git/WORC/WORC/tests
[INFO]       job:1152 >> Data for output output_zip is valid
[INFO]       job:1152 >> Data for output output_csv is valid
[INFO] executionscript:0092 >> Job subprocess finished
[INFO] executionscript:0095 >> Start hashing results
[INFO] executionscript:0099 >> Finished hashing results in 0.000244 seconds
[INFO] executionscript:0100 >> try end time: 2021-07-03 15:31:56.390001
[INFO] executionscript:0123 >> Execution finished normally.
[INFO] executionscript:0126 >> Writing job result to: /home/martijn/git/WORC/WORC/tests/WORC_Example_STWStrategyHN_Multiclass/plot_ranked_posteriors/all/__fastr_result__.yaml
[INFO] basepluginmanager:0078 >> Could not load plugin file /home/martijn/Documents/WORC3/lib/python3.7/site-packages/fastr/resources/plugins/targetplugins/singularitytarget.py
Could not find executable "singularity" on PATH: ['/home/martijn/Documents/WORC3/bin', '/home/martijn/miniconda2/bin', '/home/martijn/miniconda/bin', '/hoem/martijn/apps/elastix/bin', '/home/martijn/bin', '/home/martijn/.local/bin', '/opt/texbin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/games', '/usr/local/games', '/snap/bin', '/usr/lib/jvm/java-8-oracle/bin', '/usr/lib/jvm/java-8-oracle/db/bin', '/usr/lib/jvm/java-8-oracle/jre/bin']
[INFO] basepluginmanager:0078 >> Could not load plugin file /home/martijn/Documents/WORC3/lib/python3.7/site-packages/fastr/resources/plugins/executionplugins/slurmexecution.py
Could not find executable "sbatch" on PATH: ['/home/martijn/Documents/WORC3/bin', '/home/martijn/miniconda2/bin', '/home/martijn/miniconda/bin', '/hoem/martijn/apps/elastix/bin', '/home/martijn/bin', '/home/martijn/.local/bin', '/opt/texbin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/games', '/usr/local/games', '/snap/bin', '/usr/lib/jvm/java-8-oracle/bin', '/usr/lib/jvm/java-8-oracle/db/bin', '/usr/lib/jvm/java-8-oracle/jre/bin']
[INFO] executionscript:0135 >> End time: 2021-07-03 15:31:56.563448
[INFO] executionscript:0183 >> ---------------------------

