# Byte-compiled / optimized
__pycache__/
*.py[cod]

# Setuptools-scm file
_version.py

# C extensions and binaries
*.so
*.o

# Compressed files
*.tar
*.tar.gz
*.zip

# Distribution / packaging
build/
dist/
sdist/
eggs/
.eggs/
*.egg-info/
*.egg
wheels/
wheelhouse/
share/python-wheels/

# Coverage
htmlcov/
.coverage
.coverage.*
coverage.xml
coverage.json
.hypothesis
.pytest_cache/

# Sphinx documentation
docs/build
docs/src/_api_autogen/

# Mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Vim swap files
*.swo
*.swp

# nohup
nohup.out

# vscode
.vscode

# language server
.ccls-cache

# memray memory profile files
*.bin
*-flamegraph-memray.html

# py-spy profile files
profile.svg
profile_output*

# Outputs / inputs
*.npy
monitor-rss*.csv
peak-rss*.json
cluster-mol-ids*.json
config*.json
timings*.json
max-rss.txt

# Pickle
*.pkl
*.pickle

# Shell and python scripts
*.script.sh
*.script.bash
*.script.py
script.py
script.sh

# Jupyter checkpoints
.ipynb_checkpoints/

# Outputs from examples
examples/*.png
examples/*.csv
!examples/biogen_logS.csv
*.pdf
