LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
tests/test_cancer_driver_gene.py
tests/test_cancer_hotspots.py
tests/test_cli_flags.py
tests/test_config.py
tests/test_contig_filtering.py
tests/test_core_logic_config.py
tests/test_deploy_script.py
tests/test_dna_fallback.py
tests/test_entry_point_config.py
tests/test_epitope_dsl.py
tests/test_epitope_io.py
tests/test_epitope_prediction.py
tests/test_manufacturability.py
tests/test_mutant_protein_sequence.py
tests/test_neoepitope_report.py
tests/test_patient_info.py
tests/test_prediction_cache.py
tests/test_ranking.py
tests/test_reference_proteome.py
tests/test_serialization_roundtrip.py
tests/test_shell_script.py
tests/test_vaccine_peptide_config.py
tests/test_variant_counts.py
tests/test_variant_ranking.py
tests/testing_helpers.py
vaxrank/__init__.py
vaxrank/cancer_hotspots.py
vaxrank/core_logic.py
vaxrank/epitope_config.py
vaxrank/epitope_dsl.py
vaxrank/epitope_io.py
vaxrank/epitope_logic.py
vaxrank/epitope_prediction.py
vaxrank/gene_pathway_check.py
vaxrank/logging.conf
vaxrank/manufacturability.py
vaxrank/mutant_protein_fragment.py
vaxrank/patient_info.py
vaxrank/ranking.py
vaxrank/reference_proteome.py
vaxrank/report.py
vaxrank/vaccine_config.py
vaxrank/vaccine_peptide.py
vaxrank/vaxrank_results.py
vaxrank/version.py
vaxrank.egg-info/PKG-INFO
vaxrank.egg-info/SOURCES.txt
vaxrank.egg-info/dependency_links.txt
vaxrank.egg-info/entry_points.txt
vaxrank.egg-info/requires.txt
vaxrank.egg-info/top_level.txt
vaxrank/cli/__init__.py
vaxrank/cli/arg_parser.py
vaxrank/cli/entry_point.py
vaxrank/cli/epitope_config_args.py
vaxrank/cli/vaccine_config_args.py
vaxrank/config/__init__.py
vaxrank/config/defaults.py
vaxrank/config/loader.py
vaxrank/config/schema.py
vaxrank/data/cancer-driver-genes.csv
vaxrank/data/cancer-driver-variants.csv
vaxrank/data/cancer_hotspots_v2.tsv
vaxrank/data/class1-mhc-presentation-pathway.csv
vaxrank/data/interferon-gamma-response.csv
vaxrank/templates/stylesheet.css
vaxrank/templates/template.html
vaxrank/templates/template.txt