ManagePlume module

ManagePlume.pack_to_hdf5(file_path, file_name)

This function will read the images in folders(plumes) under “ds_path/BMP/<target_name>” and convert them into a hdf5 file with following data struction:

file_name:ds_path.h5

group: PLD_Plumes

dataset: target_name(SrRuO3) = n_videos*n_frames*H*W (np.float32)

Parameters

• file_path (str) – the path of PLD plume directory

• file_name (str) – the name of the hdf5 file

ManagePlume.pack_to_hdf5_and_upload(file_path, file_name, growth_para)

This is a function used to pack a folder of PLD plume and upload to DataFed server with recorded growth condition

Parameters

• file_path (str) – the path of PLD plume directory

• file_name (str) – the name of the hdf5 file

• growth_para (dict) – recorded pld growth condition

ManagePlume.remove_desktop_ini(path)

This function is designed to remove “desktop.ini” file in 4 sub-directories under given path

Parameters

path (str) – the path of target directory

ManagePlume.upload_to_datafed(file_path, file_name, growth_para, dataset_id='c/391937642')

This function will upload a hdf5 file to DataFed server with specified “dataset_id” An Globus Endpoint is required to set up in local server before use this funciton

Parameters

• file_path (str) – the path of PLD plume directory

• file_name (str) – the name of the hdf5 file

• growth_para (dict) – recorded pld growth condition

• dataset_id (str) – DataFed dataset id for uploading