LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
tests/__init__.py
tests/benchmark_vcf_load.py
tests/common.py
tests/data.py
tests/test_annotator_parity_adversarial.py
tests/test_annotators.py
tests/test_cli_effects.py
tests/test_cli_genes.py
tests/test_collection_filtering.py
tests/test_collection_variants_attr_consistency.py
tests/test_common.py
tests/test_cosmic_mutations.py
tests/test_csv_roundtrip.py
tests/test_dbnsfp_validation.py
tests/test_effect_annotation_errors.py
tests/test_effect_classes.py
tests/test_effect_collection.py
tests/test_effect_collection_serialization.py
tests/test_effect_collection_sort_order.py
tests/test_effects_from_mutagenix_variants.py
tests/test_exonic_splice_site.py
tests/test_exonic_splice_site_multi_outcome.py
tests/test_fast_path.py
tests/test_frameshift_helpers.py
tests/test_genotype.py
tests/test_genotype_from_vcf.py
tests/test_maf.py
tests/test_mitochondrial.py
tests/test_mm10_klf6_frameshift.py
tests/test_mouse.py
tests/test_mutant_transcript.py
tests/test_mutate.py
tests/test_no_duplicate_variants.py
tests/test_premature_stop_short_description.py
tests/test_problematic_variants.py
tests/test_protein_diff_parity.py
tests/test_reference.py
tests/test_reference_mismatch_error.py
tests/test_silent_aa_pos.py
tests/test_silent_hgvs_description.py
tests/test_splice_outcomes.py
tests/test_splice_site_effects.py
tests/test_stop_codon_classification_bugs.py
tests/test_string_helpers.py
tests/test_symbolic_alleles.py
tests/test_timings.py
tests/test_variant.py
tests/test_variant_collection.py
tests/test_vcf.py
tests/test_vcf_output.py
varcode/__init__.py
varcode/common.py
varcode/csv_helpers.py
varcode/errors.py
varcode/genotype.py
varcode/maf.py
varcode/mutant_transcript.py
varcode/nucleotides.py
varcode/reference.py
varcode/splice_outcomes.py
varcode/string_helpers.py
varcode/ucsc_reference_names.py
varcode/util.py
varcode/variant.py
varcode/variant_collection.py
varcode/vcf.py
varcode/vcf_output.py
varcode/version.py
varcode.egg-info/PKG-INFO
varcode.egg-info/SOURCES.txt
varcode.egg-info/dependency_links.txt
varcode.egg-info/entry_points.txt
varcode.egg-info/requires.txt
varcode.egg-info/top_level.txt
varcode/annotators/__init__.py
varcode/annotators/fast.py
varcode/annotators/protein_diff.py
varcode/annotators/registry.py
varcode/cli/__init__.py
varcode/cli/effects_script.py
varcode/cli/genes_script.py
varcode/cli/logging.conf
varcode/cli/variant_args.py
varcode/cli/version_info.py
varcode/effects/__init__.py
varcode/effects/classify.py
varcode/effects/codon_tables.py
varcode/effects/common.py
varcode/effects/effect_classes.py
varcode/effects/effect_collection.py
varcode/effects/effect_helpers.py
varcode/effects/effect_ordering.py
varcode/effects/effect_prediction.py
varcode/effects/effect_prediction_coding.py
varcode/effects/effect_prediction_coding_frameshift.py
varcode/effects/effect_prediction_coding_in_frame.py
varcode/effects/fast_path.py
varcode/effects/mutate.py
varcode/effects/transcript_helpers.py
varcode/effects/translate.py