Metadata-Version: 1.2
Name: cortexpy
Version: 0.34.0
Summary: The python sister project to CortexJDK
Home-page: https://github.com/winni2k/cortexpy
Author: Warren W. Kretzschmar, Kiran V Garimella
Author-email: winni@warrenwk.com, kiran.garimella@gmail.com
License: Apache-2.0
Download-URL: https://github.com/winni2k/cortexpy/archive/0.34.0.tar.gz
Description: ========
        Overview
        ========
        
        .. start-badges
        
        .. list-table::
            :stub-columns: 1
        
            * - docs
              - |docs|
            * - tests
              - | |travis|
                | |coveralls| |codecov|
            * - package
              - | |version| |wheel| |supported-versions| |supported-implementations|
                | |commits-since|
        
        .. |docs| image:: https://readthedocs.org/projects/cortexpy/badge/?style=flat
            :target: https://readthedocs.org/projects/cortexpy
            :alt: Documentation Status
        
        .. |travis| image:: https://travis-ci.org/winni2k/cortexpy.svg?branch=master
            :alt: Travis-CI Build Status
            :target: https://travis-ci.org/winni2k/cortexpy
        
        .. |coveralls| image:: https://coveralls.io/repos/winni2k/cortexpy/badge.svg?branch=master&service=github
            :alt: Coverage Status
            :target: https://coveralls.io/r/winni2k/cortexpy
        
        .. |codecov| image:: https://codecov.io/github/winni2k/cortexpy/coverage.svg?branch=master
            :alt: Coverage Status
            :target: https://codecov.io/github/winni2k/cortexpy
        
        .. |version| image:: https://img.shields.io/pypi/v/cortexpy.svg
            :alt: PyPI Package latest release
            :target: https://pypi.python.org/pypi/cortexpy
        
        .. |commits-since| image:: https://img.shields.io/github/commits-since/winni2k/cortexpy/0.34.0.svg
            :alt: Commits since latest release
            :target: https://github.com/winni2k/cortexpy/compare/0.34.0...master
        
        .. |wheel| image:: https://img.shields.io/pypi/wheel/cortexpy.svg
            :alt: PyPI Wheel
            :target: https://pypi.python.org/pypi/cortexpy
        
        .. |supported-versions| image:: https://img.shields.io/pypi/pyversions/cortexpy.svg
            :alt: Supported versions
            :target: https://pypi.python.org/pypi/cortexpy
        
        .. |supported-implementations| image:: https://img.shields.io/pypi/implementation/cortexpy.svg
            :alt: Supported implementations
            :target: https://pypi.python.org/pypi/cortexpy
        
        
        .. end-badges
        
        Cortexpy is a Python package for sequence analysis using linked and colored De Bruijn graphs such as
        the ones created by `Mccortex <https://github.com/mcveanlab/mccortex>`_.
        This project aims to mirror many of the features contained in
        `CortexJDK <https://github.com/mcveanlab/CortexJDK>`_.
        
        * Free software: Apache Software License 2.0
        
        Installation
        ============
        
        ::
        
            pip install cortexpy
        
        
        Development
        ===========
        
        Set up the project::
        
            make init
        
        To run the all tests run::
        
            tox
        
        Note, to combine the coverage data from all the tox environments run:
        
        .. list-table::
            :widths: 10 90
            :stub-columns: 1
        
            - - Windows
              - ::
        
                    set PYTEST_ADDOPTS=--cov-append
                    tox
        
            - - Other
              - ::
        
                    PYTEST_ADDOPTS=--cov-append tox
        
        Bugs
        ====
        
        Please raise a github issue for any bugs.
        
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: Implementation :: CPython
Requires-Python: >=3.6
