LICENSE
MANIFEST.in
README.md
pyproject.toml
pygnome/__init__.py
pygnome/feature_store/__init__.py
pygnome/feature_store/binned_store.py
pygnome/feature_store/brute_force_store.py
pygnome/feature_store/chromosome_feature_store.py
pygnome/feature_store/genomic_feature_store.py
pygnome/feature_store/genomic_feature_store_protocol.py
pygnome/feature_store/interval_tree_store.py
pygnome/feature_store/msi_chromosome_store.py
pygnome/genomics/__init__.py
pygnome/genomics/biotype.py
pygnome/genomics/cds.py
pygnome/genomics/chromosome.py
pygnome/genomics/chromosome_category.py
pygnome/genomics/codon_table.py
pygnome/genomics/exon.py
pygnome/genomics/gene.py
pygnome/genomics/genome.py
pygnome/genomics/genomic_feature.py
pygnome/genomics/intron.py
pygnome/genomics/phase.py
pygnome/genomics/splice_site.py
pygnome/genomics/splice_site_type.py
pygnome/genomics/strand.py
pygnome/genomics/transcript.py
pygnome/genomics/utr.py
pygnome/genomics/utr_type.py
pygnome/genomics/variant.py
pygnome/parsers/__init__.py
pygnome/parsers/genome_loader.py
pygnome/parsers/fasta/fasta_parser.py
pygnome/parsers/fasta/fastq_parser.py
pygnome/parsers/gff/__init__.py
pygnome/parsers/gff/base_parser.py
pygnome/parsers/gff/feature_hierarchy.py
pygnome/parsers/gff/format.py
pygnome/parsers/gff/genome_loader.py
pygnome/parsers/gff/gff.py
pygnome/parsers/gff/gff2_parser.py
pygnome/parsers/gff/gff3_parser.py
pygnome/parsers/gff/gtf_parser.py
pygnome/parsers/gff/record.py
pygnome/parsers/msi/__init__.py
pygnome/parsers/msi/msi_site_record.py
pygnome/parsers/msi/msi_sites_loader.py
pygnome/parsers/msi/msi_sites_reader.py
pygnome/parsers/vcf/__init__.py
pygnome/parsers/vcf/variant_factory.py
pygnome/parsers/vcf/vcf_field_parser.py
pygnome/parsers/vcf/vcf_format.py
pygnome/parsers/vcf/vcf_genotypes.py
pygnome/parsers/vcf/vcf_header.py
pygnome/parsers/vcf/vcf_info.py
pygnome/parsers/vcf/vcf_reader.py
pygnome/parsers/vcf/vcf_record.py
pygnome/parsers/vcf/ann/__init__.py
pygnome/parsers/vcf/ann/ann_parser.py
pygnome/parsers/vcf/ann/enums.py
pygnome/parsers/vcf/ann/variant_annotation.py
pygnome/sequences/__init__.py
pygnome/sequences/alphabets.py
pygnome/sequences/base_sequence.py
pygnome/sequences/dna_string.py
pygnome/sequences/dna_string_array.py
pygnome/sequences/rna_string.py
pygnome/sequences/utils.py