MANIFEST.in
README.md
setup.py
setup_clibs.py
version.txt
amici/MANIFEST.template.in
amici/__init__.py
amici/__init__.template.py
amici/constants.py
amici/custom_commands.py
amici/git_version.txt
amici/gradient_check.py
amici/logging.py
amici/numpy.py
amici/ode_export.py
amici/pandas.py
amici/parameter_mapping.py
amici/petab_import.py
amici/petab_import_pysb.py
amici/petab_objective.py
amici/petab_simulate.py
amici/plotting.py
amici/pysb_import.py
amici/sbml_import.py
amici/setup.template.py
amici/setuptools.py
amici/swig.py
amici/version.txt
amici.egg-info/PKG-INFO
amici.egg-info/SOURCES.txt
amici.egg-info/dependency_links.txt
amici.egg-info/entry_points.txt
amici.egg-info/not-zip-safe
amici.egg-info/requires.txt
amici.egg-info/top_level.txt
amici/ThirdParty/SuiteSparse/LICENSE.txt
amici/ThirdParty/SuiteSparse/AMD/Demo/amd_demo.c
amici/ThirdParty/SuiteSparse/AMD/Demo/amd_demo2.c
amici/ThirdParty/SuiteSparse/AMD/Demo/amd_f77wrapper.c
amici/ThirdParty/SuiteSparse/AMD/Demo/amd_l_demo.c
amici/ThirdParty/SuiteSparse/AMD/Demo/amd_simple.c
amici/ThirdParty/SuiteSparse/AMD/Include/amd.h
amici/ThirdParty/SuiteSparse/AMD/Include/amd_internal.h
amici/ThirdParty/SuiteSparse/AMD/MATLAB/amd_mex.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_1.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_2.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_aat.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_control.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_defaults.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_dump.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_global.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_info.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_order.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_post_tree.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_postorder.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_preprocess.c
amici/ThirdParty/SuiteSparse/AMD/Source/amd_valid.c
amici/ThirdParty/SuiteSparse/BTF/Include/btf.h
amici/ThirdParty/SuiteSparse/BTF/Include/btf_internal.h
amici/ThirdParty/SuiteSparse/BTF/MATLAB/btf.c
amici/ThirdParty/SuiteSparse/BTF/MATLAB/maxtrans.c
amici/ThirdParty/SuiteSparse/BTF/MATLAB/strongcomp.c
amici/ThirdParty/SuiteSparse/BTF/Source/btf_maxtrans.c
amici/ThirdParty/SuiteSparse/BTF/Source/btf_order.c
amici/ThirdParty/SuiteSparse/BTF/Source/btf_strongcomp.c
amici/ThirdParty/SuiteSparse/CAMD/Demo/camd_demo.c
amici/ThirdParty/SuiteSparse/CAMD/Demo/camd_demo2.c
amici/ThirdParty/SuiteSparse/CAMD/Demo/camd_l_demo.c
amici/ThirdParty/SuiteSparse/CAMD/Demo/camd_simple.c
amici/ThirdParty/SuiteSparse/CAMD/Include/camd.h
amici/ThirdParty/SuiteSparse/CAMD/Include/camd_internal.h
amici/ThirdParty/SuiteSparse/CAMD/MATLAB/camd_mex.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_1.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_2.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_aat.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_control.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_defaults.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_dump.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_global.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_info.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_order.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_postorder.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_preprocess.c
amici/ThirdParty/SuiteSparse/CAMD/Source/camd_valid.c
amici/ThirdParty/SuiteSparse/COLAMD/Demo/colamd_example.c
amici/ThirdParty/SuiteSparse/COLAMD/Demo/colamd_l_example.c
amici/ThirdParty/SuiteSparse/COLAMD/Include/colamd.h
amici/ThirdParty/SuiteSparse/COLAMD/MATLAB/colamdmex.c
amici/ThirdParty/SuiteSparse/COLAMD/MATLAB/colamdtestmex.c
amici/ThirdParty/SuiteSparse/COLAMD/MATLAB/symamdmex.c
amici/ThirdParty/SuiteSparse/COLAMD/MATLAB/symamdtestmex.c
amici/ThirdParty/SuiteSparse/COLAMD/Source/colamd.c
amici/ThirdParty/SuiteSparse/KLU/Demo/klu_simple.c
amici/ThirdParty/SuiteSparse/KLU/Demo/kludemo.c
amici/ThirdParty/SuiteSparse/KLU/Demo/kluldemo.c
amici/ThirdParty/SuiteSparse/KLU/Include/klu.h
amici/ThirdParty/SuiteSparse/KLU/Include/klu_internal.h
amici/ThirdParty/SuiteSparse/KLU/Include/klu_version.h
amici/ThirdParty/SuiteSparse/KLU/MATLAB/klu_mex.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_analyze.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_analyze_given.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_defaults.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_diagnostics.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_dump.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_extract.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_factor.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_free_numeric.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_free_symbolic.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_kernel.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_memory.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_refactor.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_scale.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_solve.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_sort.c
amici/ThirdParty/SuiteSparse/KLU/Source/klu_tsolve.c
amici/ThirdParty/SuiteSparse/KLU/Tcov/klutest.c
amici/ThirdParty/SuiteSparse/KLU/User/klu_cholmod.c
amici/ThirdParty/SuiteSparse/KLU/User/klu_cholmod.h
amici/ThirdParty/SuiteSparse/KLU/User/klu_l_cholmod.c
amici/ThirdParty/SuiteSparse/SuiteSparse_config/SuiteSparse_config.c
amici/ThirdParty/SuiteSparse/SuiteSparse_config/SuiteSparse_config.h
amici/ThirdParty/SuiteSparse/SuiteSparse_config/xerbla/xerbla.c
amici/ThirdParty/SuiteSparse/SuiteSparse_config/xerbla/xerbla.h
amici/ThirdParty/SuiteSparse/include/SuiteSparse_config.h
amici/ThirdParty/SuiteSparse/include/amd.h
amici/ThirdParty/SuiteSparse/include/btf.h
amici/ThirdParty/SuiteSparse/include/camd.h
amici/ThirdParty/SuiteSparse/include/colamd.h
amici/ThirdParty/SuiteSparse/include/klu.h
amici/ThirdParty/gsl/gsl/gsl-lite.hpp
amici/ThirdParty/sundials/LICENSE
amici/ThirdParty/sundials/include/arkode/arkode.h
amici/ThirdParty/sundials/include/arkode/arkode_arkstep.h
amici/ThirdParty/sundials/include/arkode/arkode_bandpre.h
amici/ThirdParty/sundials/include/arkode/arkode_bbdpre.h
amici/ThirdParty/sundials/include/arkode/arkode_butcher.h
amici/ThirdParty/sundials/include/arkode/arkode_butcher_dirk.h
amici/ThirdParty/sundials/include/arkode/arkode_butcher_erk.h
amici/ThirdParty/sundials/include/arkode/arkode_erkstep.h
amici/ThirdParty/sundials/include/arkode/arkode_ls.h
amici/ThirdParty/sundials/include/arkode/arkode_mristep.h
amici/ThirdParty/sundials/include/cvode/cvode.h
amici/ThirdParty/sundials/include/cvode/cvode_bandpre.h
amici/ThirdParty/sundials/include/cvode/cvode_bbdpre.h
amici/ThirdParty/sundials/include/cvode/cvode_diag.h
amici/ThirdParty/sundials/include/cvode/cvode_direct.h
amici/ThirdParty/sundials/include/cvode/cvode_ls.h
amici/ThirdParty/sundials/include/cvode/cvode_spils.h
amici/ThirdParty/sundials/include/cvodes/cvodes.h
amici/ThirdParty/sundials/include/cvodes/cvodes_bandpre.h
amici/ThirdParty/sundials/include/cvodes/cvodes_bbdpre.h
amici/ThirdParty/sundials/include/cvodes/cvodes_diag.h
amici/ThirdParty/sundials/include/cvodes/cvodes_direct.h
amici/ThirdParty/sundials/include/cvodes/cvodes_ls.h
amici/ThirdParty/sundials/include/cvodes/cvodes_spils.h
amici/ThirdParty/sundials/include/ida/ida.h
amici/ThirdParty/sundials/include/ida/ida_bbdpre.h
amici/ThirdParty/sundials/include/ida/ida_direct.h
amici/ThirdParty/sundials/include/ida/ida_ls.h
amici/ThirdParty/sundials/include/ida/ida_spils.h
amici/ThirdParty/sundials/include/idas/idas.h
amici/ThirdParty/sundials/include/idas/idas_bbdpre.h
amici/ThirdParty/sundials/include/idas/idas_direct.h
amici/ThirdParty/sundials/include/idas/idas_ls.h
amici/ThirdParty/sundials/include/idas/idas_spils.h
amici/ThirdParty/sundials/include/kinsol/kinsol.h
amici/ThirdParty/sundials/include/kinsol/kinsol_bbdpre.h
amici/ThirdParty/sundials/include/kinsol/kinsol_direct.h
amici/ThirdParty/sundials/include/kinsol/kinsol_ls.h
amici/ThirdParty/sundials/include/kinsol/kinsol_spils.h
amici/ThirdParty/sundials/include/nvector/nvector_cuda.h
amici/ThirdParty/sundials/include/nvector/nvector_manyvector.h
amici/ThirdParty/sundials/include/nvector/nvector_mpimanyvector.h
amici/ThirdParty/sundials/include/nvector/nvector_mpiplusx.h
amici/ThirdParty/sundials/include/nvector/nvector_openmp.h
amici/ThirdParty/sundials/include/nvector/nvector_openmpdev.h
amici/ThirdParty/sundials/include/nvector/nvector_parallel.h
amici/ThirdParty/sundials/include/nvector/nvector_parhyp.h
amici/ThirdParty/sundials/include/nvector/nvector_petsc.h
amici/ThirdParty/sundials/include/nvector/nvector_pthreads.h
amici/ThirdParty/sundials/include/nvector/nvector_raja.h
amici/ThirdParty/sundials/include/nvector/nvector_serial.h
amici/ThirdParty/sundials/include/nvector/nvector_trilinos.h
amici/ThirdParty/sundials/include/sundials/sundials_band.h
amici/ThirdParty/sundials/include/sundials/sundials_config.h
amici/ThirdParty/sundials/include/sundials/sundials_dense.h
amici/ThirdParty/sundials/include/sundials/sundials_direct.h
amici/ThirdParty/sundials/include/sundials/sundials_fnvector.h
amici/ThirdParty/sundials/include/sundials/sundials_futils.h
amici/ThirdParty/sundials/include/sundials/sundials_iterative.h
amici/ThirdParty/sundials/include/sundials/sundials_lapack.h
amici/ThirdParty/sundials/include/sundials/sundials_linearsolver.h
amici/ThirdParty/sundials/include/sundials/sundials_math.h
amici/ThirdParty/sundials/include/sundials/sundials_matrix.h
amici/ThirdParty/sundials/include/sundials/sundials_mpi_types.h
amici/ThirdParty/sundials/include/sundials/sundials_nonlinearsolver.h
amici/ThirdParty/sundials/include/sundials/sundials_nvector.h
amici/ThirdParty/sundials/include/sundials/sundials_nvector_senswrapper.h
amici/ThirdParty/sundials/include/sundials/sundials_types.h
amici/ThirdParty/sundials/include/sundials/sundials_version.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_band.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_cusolversp_batchqr.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_dense.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_klu.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_lapackband.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_lapackdense.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_pcg.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_spbcgs.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_spfgmr.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_spgmr.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_sptfqmr.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_superludist.h
amici/ThirdParty/sundials/include/sunlinsol/sunlinsol_superlumt.h
amici/ThirdParty/sundials/include/sunmatrix/sunmatrix_band.h
amici/ThirdParty/sundials/include/sunmatrix/sunmatrix_cusparse.h
amici/ThirdParty/sundials/include/sunmatrix/sunmatrix_dense.h
amici/ThirdParty/sundials/include/sunmatrix/sunmatrix_slunrloc.h
amici/ThirdParty/sundials/include/sunmatrix/sunmatrix_sparse.h
amici/ThirdParty/sundials/include/sunnonlinsol/sunnonlinsol_fixedpoint.h
amici/ThirdParty/sundials/include/sunnonlinsol/sunnonlinsol_newton.h
amici/ThirdParty/sundials/include/sunnonlinsol/sunnonlinsol_petscsnes.h
amici/ThirdParty/sundials/src/arkode/LICENSE
amici/ThirdParty/sundials/src/arkode/arkode.c
amici/ThirdParty/sundials/src/arkode/arkode_adapt.c
amici/ThirdParty/sundials/src/arkode/arkode_adapt_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_arkstep.c
amici/ThirdParty/sundials/src/arkode/arkode_arkstep_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_arkstep_io.c
amici/ThirdParty/sundials/src/arkode/arkode_arkstep_nls.c
amici/ThirdParty/sundials/src/arkode/arkode_bandpre.c
amici/ThirdParty/sundials/src/arkode/arkode_bandpre_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_bbdpre.c
amici/ThirdParty/sundials/src/arkode/arkode_bbdpre_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_butcher.c
amici/ThirdParty/sundials/src/arkode/arkode_butcher_dirk.c
amici/ThirdParty/sundials/src/arkode/arkode_butcher_erk.c
amici/ThirdParty/sundials/src/arkode/arkode_erkstep.c
amici/ThirdParty/sundials/src/arkode/arkode_erkstep_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_erkstep_io.c
amici/ThirdParty/sundials/src/arkode/arkode_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_interp.c
amici/ThirdParty/sundials/src/arkode/arkode_interp_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_io.c
amici/ThirdParty/sundials/src/arkode/arkode_ls.c
amici/ThirdParty/sundials/src/arkode/arkode_ls_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_mristep.c
amici/ThirdParty/sundials/src/arkode/arkode_mristep_impl.h
amici/ThirdParty/sundials/src/arkode/arkode_mristep_io.c
amici/ThirdParty/sundials/src/arkode/arkode_root.c
amici/ThirdParty/sundials/src/arkode/arkode_root_impl.h
amici/ThirdParty/sundials/src/arkode/fcmix/farkadapt.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkband.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkbandmass.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkbbd.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkbbd.h
amici/ThirdParty/sundials/src/arkode/fcmix/farkbp.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkbp.h
amici/ThirdParty/sundials/src/arkode/fcmix/farkdense.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkdensemass.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkewt.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkexpstab.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkjtimes.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkmasspreco.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkmtimes.c
amici/ThirdParty/sundials/src/arkode/fcmix/farknulllinsol.c
amici/ThirdParty/sundials/src/arkode/fcmix/farknullmatrix.c
amici/ThirdParty/sundials/src/arkode/fcmix/farknullnonlinsol.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkode.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkode.h
amici/ThirdParty/sundials/src/arkode/fcmix/farkpreco.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkroot.c
amici/ThirdParty/sundials/src/arkode/fcmix/farkroot.h
amici/ThirdParty/sundials/src/arkode/fcmix/farksparse.c
amici/ThirdParty/sundials/src/arkode/fcmix/farksparsemass.c
amici/ThirdParty/sundials/src/arkode/fmod/farkode_arkstep_mod.c
amici/ThirdParty/sundials/src/arkode/fmod/farkode_erkstep_mod.c
amici/ThirdParty/sundials/src/arkode/fmod/farkode_mod.c
amici/ThirdParty/sundials/src/arkode/fmod/farkode_mristep_mod.c
amici/ThirdParty/sundials/src/cvode/LICENSE
amici/ThirdParty/sundials/src/cvode/cvode.c
amici/ThirdParty/sundials/src/cvode/cvode_bandpre.c
amici/ThirdParty/sundials/src/cvode/cvode_bandpre_impl.h
amici/ThirdParty/sundials/src/cvode/cvode_bbdpre.c
amici/ThirdParty/sundials/src/cvode/cvode_bbdpre_impl.h
amici/ThirdParty/sundials/src/cvode/cvode_diag.c
amici/ThirdParty/sundials/src/cvode/cvode_diag_impl.h
amici/ThirdParty/sundials/src/cvode/cvode_direct.c
amici/ThirdParty/sundials/src/cvode/cvode_impl.h
amici/ThirdParty/sundials/src/cvode/cvode_io.c
amici/ThirdParty/sundials/src/cvode/cvode_ls.c
amici/ThirdParty/sundials/src/cvode/cvode_ls_impl.h
amici/ThirdParty/sundials/src/cvode/cvode_nls.c
amici/ThirdParty/sundials/src/cvode/cvode_spils.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvband.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvbbd.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvbbd.h
amici/ThirdParty/sundials/src/cvode/fcmix/fcvbp.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvbp.h
amici/ThirdParty/sundials/src/cvode/fcmix/fcvdense.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvewt.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvjtimes.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvnulllinsol.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvnullmatrix.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvnullnonlinsol.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvode.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvode.h
amici/ThirdParty/sundials/src/cvode/fcmix/fcvpreco.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvroot.c
amici/ThirdParty/sundials/src/cvode/fcmix/fcvroot.h
amici/ThirdParty/sundials/src/cvode/fcmix/fcvsparse.c
amici/ThirdParty/sundials/src/cvode/fmod/fcvode_mod.c
amici/ThirdParty/sundials/src/cvodes/LICENSE
amici/ThirdParty/sundials/src/cvodes/cvodea.c
amici/ThirdParty/sundials/src/cvodes/cvodea_io.c
amici/ThirdParty/sundials/src/cvodes/cvodes.c
amici/ThirdParty/sundials/src/cvodes/cvodes_bandpre.c
amici/ThirdParty/sundials/src/cvodes/cvodes_bandpre_impl.h
amici/ThirdParty/sundials/src/cvodes/cvodes_bbdpre.c
amici/ThirdParty/sundials/src/cvodes/cvodes_bbdpre_impl.h
amici/ThirdParty/sundials/src/cvodes/cvodes_diag.c
amici/ThirdParty/sundials/src/cvodes/cvodes_diag_impl.h
amici/ThirdParty/sundials/src/cvodes/cvodes_direct.c
amici/ThirdParty/sundials/src/cvodes/cvodes_impl.h
amici/ThirdParty/sundials/src/cvodes/cvodes_io.c
amici/ThirdParty/sundials/src/cvodes/cvodes_ls.c
amici/ThirdParty/sundials/src/cvodes/cvodes_ls_impl.h
amici/ThirdParty/sundials/src/cvodes/cvodes_nls.c
amici/ThirdParty/sundials/src/cvodes/cvodes_nls_sim.c
amici/ThirdParty/sundials/src/cvodes/cvodes_nls_stg.c
amici/ThirdParty/sundials/src/cvodes/cvodes_nls_stg1.c
amici/ThirdParty/sundials/src/cvodes/cvodes_spils.c
amici/ThirdParty/sundials/src/cvodes/fmod/fcvodes_mod.c
amici/ThirdParty/sundials/src/ida/LICENSE
amici/ThirdParty/sundials/src/ida/ida.c
amici/ThirdParty/sundials/src/ida/ida_bbdpre.c
amici/ThirdParty/sundials/src/ida/ida_bbdpre_impl.h
amici/ThirdParty/sundials/src/ida/ida_direct.c
amici/ThirdParty/sundials/src/ida/ida_ic.c
amici/ThirdParty/sundials/src/ida/ida_impl.h
amici/ThirdParty/sundials/src/ida/ida_io.c
amici/ThirdParty/sundials/src/ida/ida_ls.c
amici/ThirdParty/sundials/src/ida/ida_ls_impl.h
amici/ThirdParty/sundials/src/ida/ida_nls.c
amici/ThirdParty/sundials/src/ida/ida_spils.c
amici/ThirdParty/sundials/src/ida/fcmix/fida.c
amici/ThirdParty/sundials/src/ida/fcmix/fida.h
amici/ThirdParty/sundials/src/ida/fcmix/fidaband.c
amici/ThirdParty/sundials/src/ida/fcmix/fidabbd.c
amici/ThirdParty/sundials/src/ida/fcmix/fidabbd.h
amici/ThirdParty/sundials/src/ida/fcmix/fidadense.c
amici/ThirdParty/sundials/src/ida/fcmix/fidaewt.c
amici/ThirdParty/sundials/src/ida/fcmix/fidajtimes.c
amici/ThirdParty/sundials/src/ida/fcmix/fidanullmatrix.c
amici/ThirdParty/sundials/src/ida/fcmix/fidanullnonlinsol.c
amici/ThirdParty/sundials/src/ida/fcmix/fidapreco.c
amici/ThirdParty/sundials/src/ida/fcmix/fidaroot.c
amici/ThirdParty/sundials/src/ida/fcmix/fidaroot.h
amici/ThirdParty/sundials/src/ida/fcmix/fidasparse.c
amici/ThirdParty/sundials/src/ida/fmod/fida_mod.c
amici/ThirdParty/sundials/src/idas/LICENSE
amici/ThirdParty/sundials/src/idas/idaa.c
amici/ThirdParty/sundials/src/idas/idaa_io.c
amici/ThirdParty/sundials/src/idas/idas.c
amici/ThirdParty/sundials/src/idas/idas_bbdpre.c
amici/ThirdParty/sundials/src/idas/idas_bbdpre_impl.h
amici/ThirdParty/sundials/src/idas/idas_direct.c
amici/ThirdParty/sundials/src/idas/idas_ic.c
amici/ThirdParty/sundials/src/idas/idas_impl.h
amici/ThirdParty/sundials/src/idas/idas_io.c
amici/ThirdParty/sundials/src/idas/idas_ls.c
amici/ThirdParty/sundials/src/idas/idas_ls_impl.h
amici/ThirdParty/sundials/src/idas/idas_nls.c
amici/ThirdParty/sundials/src/idas/idas_nls_sim.c
amici/ThirdParty/sundials/src/idas/idas_nls_stg.c
amici/ThirdParty/sundials/src/idas/idas_spils.c
amici/ThirdParty/sundials/src/idas/fmod/fidas_mod.c
amici/ThirdParty/sundials/src/kinsol/LICENSE
amici/ThirdParty/sundials/src/kinsol/kinsol.c
amici/ThirdParty/sundials/src/kinsol/kinsol_bbdpre.c
amici/ThirdParty/sundials/src/kinsol/kinsol_bbdpre_impl.h
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amici/ThirdParty/sundials/src/kinsol/kinsol_ls.c
amici/ThirdParty/sundials/src/kinsol/kinsol_ls_impl.h
amici/ThirdParty/sundials/src/kinsol/kinsol_spils.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinband.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinbbd.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinbbd.h
amici/ThirdParty/sundials/src/kinsol/fcmix/fkindense.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinjtimes.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinnulllinsol.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinnullmatrix.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinpreco.c
amici/ThirdParty/sundials/src/kinsol/fcmix/fkinsol.c
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amici/ThirdParty/sundials/src/nvector/manyvector/nvector_manyvector.c
amici/ThirdParty/sundials/src/nvector/manyvector/fmod/fnvector_manyvector_mod.c
amici/ThirdParty/sundials/src/nvector/manyvector/fmod/fnvector_mpimanyvector_mod.c
amici/ThirdParty/sundials/src/nvector/mpiplusx/nvector_mpiplusx.c
amici/ThirdParty/sundials/src/nvector/mpiplusx/fmod/fnvector_mpiplusx_mod.c
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amici/ThirdParty/sundials/src/nvector/openmp/fnvector_openmp.h
amici/ThirdParty/sundials/src/nvector/openmp/nvector_openmp.c
amici/ThirdParty/sundials/src/nvector/openmp/fmod/fnvector_openmp_mod.c
amici/ThirdParty/sundials/src/nvector/openmpdev/nvector_openmpdev.c
amici/ThirdParty/sundials/src/nvector/parallel/fnvector_parallel.c
amici/ThirdParty/sundials/src/nvector/parallel/fnvector_parallel.h
amici/ThirdParty/sundials/src/nvector/parallel/nvector_parallel.c
amici/ThirdParty/sundials/src/nvector/parallel/fmod/fnvector_parallel_mod.c
amici/ThirdParty/sundials/src/nvector/parhyp/nvector_parhyp.c
amici/ThirdParty/sundials/src/nvector/petsc/nvector_petsc.c
amici/ThirdParty/sundials/src/nvector/pthreads/fnvector_pthreads.c
amici/ThirdParty/sundials/src/nvector/pthreads/fnvector_pthreads.h
amici/ThirdParty/sundials/src/nvector/pthreads/nvector_pthreads.c
amici/ThirdParty/sundials/src/nvector/pthreads/fmod/fnvector_pthreads_mod.c
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amici/ThirdParty/sundials/src/nvector/serial/fnvector_serial.h
amici/ThirdParty/sundials/src/nvector/serial/nvector_serial.c
amici/ThirdParty/sundials/src/nvector/serial/fmod/fnvector_serial_mod.c
amici/ThirdParty/sundials/src/sundials/sundials_band.c
amici/ThirdParty/sundials/src/sundials/sundials_cuda.h
amici/ThirdParty/sundials/src/sundials/sundials_debug.h
amici/ThirdParty/sundials/src/sundials/sundials_dense.c
amici/ThirdParty/sundials/src/sundials/sundials_direct.c
amici/ThirdParty/sundials/src/sundials/sundials_futils.c
amici/ThirdParty/sundials/src/sundials/sundials_iterative.c
amici/ThirdParty/sundials/src/sundials/sundials_linearsolver.c
amici/ThirdParty/sundials/src/sundials/sundials_math.c
amici/ThirdParty/sundials/src/sundials/sundials_matrix.c
amici/ThirdParty/sundials/src/sundials/sundials_nonlinearsolver.c
amici/ThirdParty/sundials/src/sundials/sundials_nvector.c
amici/ThirdParty/sundials/src/sundials/sundials_nvector_senswrapper.c
amici/ThirdParty/sundials/src/sundials/sundials_version.c
amici/ThirdParty/sundials/src/sundials/fmod/fsundials_futils_mod.c
amici/ThirdParty/sundials/src/sundials/fmod/fsundials_linearsolver_mod.c
amici/ThirdParty/sundials/src/sundials/fmod/fsundials_matrix_mod.c
amici/ThirdParty/sundials/src/sundials/fmod/fsundials_nonlinearsolver_mod.c
amici/ThirdParty/sundials/src/sundials/fmod/fsundials_nvector_mod.c
amici/ThirdParty/sundials/src/sundials/fmod/fsundials_types_mod.c
amici/ThirdParty/sundials/src/sunlinsol/band/fsunlinsol_band.c
amici/ThirdParty/sundials/src/sunlinsol/band/fsunlinsol_band.h
amici/ThirdParty/sundials/src/sunlinsol/band/sunlinsol_band.c
amici/ThirdParty/sundials/src/sunlinsol/band/fmod/fsunlinsol_band_mod.c
amici/ThirdParty/sundials/src/sunlinsol/dense/fsunlinsol_dense.c
amici/ThirdParty/sundials/src/sunlinsol/dense/fsunlinsol_dense.h
amici/ThirdParty/sundials/src/sunlinsol/dense/sunlinsol_dense.c
amici/ThirdParty/sundials/src/sunlinsol/dense/fmod/fsunlinsol_dense_mod.c
amici/ThirdParty/sundials/src/sunlinsol/klu/fsunlinsol_klu.c
amici/ThirdParty/sundials/src/sunlinsol/klu/fsunlinsol_klu.h
amici/ThirdParty/sundials/src/sunlinsol/klu/sunlinsol_klu.c
amici/ThirdParty/sundials/src/sunlinsol/klu/fmod/fsunlinsol_klu_mod.c
amici/ThirdParty/sundials/src/sunlinsol/lapackband/fsunlinsol_lapackband.c
amici/ThirdParty/sundials/src/sunlinsol/lapackband/fsunlinsol_lapackband.h
amici/ThirdParty/sundials/src/sunlinsol/lapackband/sunlinsol_lapackband.c
amici/ThirdParty/sundials/src/sunlinsol/lapackdense/fsunlinsol_lapackdense.c
amici/ThirdParty/sundials/src/sunlinsol/lapackdense/fsunlinsol_lapackdense.h
amici/ThirdParty/sundials/src/sunlinsol/lapackdense/sunlinsol_lapackdense.c
amici/ThirdParty/sundials/src/sunlinsol/pcg/fsunlinsol_pcg.c
amici/ThirdParty/sundials/src/sunlinsol/pcg/fsunlinsol_pcg.h
amici/ThirdParty/sundials/src/sunlinsol/pcg/sunlinsol_pcg.c
amici/ThirdParty/sundials/src/sunlinsol/pcg/fmod/fsunlinsol_pcg_mod.c
amici/ThirdParty/sundials/src/sunlinsol/spbcgs/fsunlinsol_spbcgs.c
amici/ThirdParty/sundials/src/sunlinsol/spbcgs/fsunlinsol_spbcgs.h
amici/ThirdParty/sundials/src/sunlinsol/spbcgs/sunlinsol_spbcgs.c
amici/ThirdParty/sundials/src/sunlinsol/spbcgs/fmod/fsunlinsol_spbcgs_mod.c
amici/ThirdParty/sundials/src/sunlinsol/spfgmr/fsunlinsol_spfgmr.c
amici/ThirdParty/sundials/src/sunlinsol/spfgmr/fsunlinsol_spfgmr.h
amici/ThirdParty/sundials/src/sunlinsol/spfgmr/sunlinsol_spfgmr.c
amici/ThirdParty/sundials/src/sunlinsol/spfgmr/fmod/fsunlinsol_spfgmr_mod.c
amici/ThirdParty/sundials/src/sunlinsol/spgmr/fsunlinsol_spgmr.c
amici/ThirdParty/sundials/src/sunlinsol/spgmr/fsunlinsol_spgmr.h
amici/ThirdParty/sundials/src/sunlinsol/spgmr/sunlinsol_spgmr.c
amici/ThirdParty/sundials/src/sunlinsol/spgmr/fmod/fsunlinsol_spgmr_mod.c
amici/ThirdParty/sundials/src/sunlinsol/sptfqmr/fsunlinsol_sptfqmr.c
amici/ThirdParty/sundials/src/sunlinsol/sptfqmr/fsunlinsol_sptfqmr.h
amici/ThirdParty/sundials/src/sunlinsol/sptfqmr/sunlinsol_sptfqmr.c
amici/ThirdParty/sundials/src/sunlinsol/sptfqmr/fmod/fsunlinsol_sptfqmr_mod.c
amici/ThirdParty/sundials/src/sunlinsol/superludist/sunlinsol_superludist.c
amici/ThirdParty/sundials/src/sunlinsol/superlumt/fsunlinsol_superlumt.c
amici/ThirdParty/sundials/src/sunlinsol/superlumt/fsunlinsol_superlumt.h
amici/ThirdParty/sundials/src/sunlinsol/superlumt/sunlinsol_superlumt.c
amici/ThirdParty/sundials/src/sunmatrix/band/fsunmatrix_band.c
amici/ThirdParty/sundials/src/sunmatrix/band/fsunmatrix_band.h
amici/ThirdParty/sundials/src/sunmatrix/band/sunmatrix_band.c
amici/ThirdParty/sundials/src/sunmatrix/band/fmod/fsunmatrix_band_mod.c
amici/ThirdParty/sundials/src/sunmatrix/dense/fsunmatrix_dense.c
amici/ThirdParty/sundials/src/sunmatrix/dense/fsunmatrix_dense.h
amici/ThirdParty/sundials/src/sunmatrix/dense/sunmatrix_dense.c
amici/ThirdParty/sundials/src/sunmatrix/dense/fmod/fsunmatrix_dense_mod.c
amici/ThirdParty/sundials/src/sunmatrix/slunrloc/sunmatrix_slunrloc.c
amici/ThirdParty/sundials/src/sunmatrix/sparse/fsunmatrix_sparse.c
amici/ThirdParty/sundials/src/sunmatrix/sparse/fsunmatrix_sparse.h
amici/ThirdParty/sundials/src/sunmatrix/sparse/sunmatrix_sparse.c
amici/ThirdParty/sundials/src/sunmatrix/sparse/fmod/fsunmatrix_sparse_mod.c
amici/ThirdParty/sundials/src/sunnonlinsol/fixedpoint/fsunnonlinsol_fixedpoint.c
amici/ThirdParty/sundials/src/sunnonlinsol/fixedpoint/fsunnonlinsol_fixedpoint.h
amici/ThirdParty/sundials/src/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c
amici/ThirdParty/sundials/src/sunnonlinsol/fixedpoint/fmod/fsunnonlinsol_fixedpoint_mod.c
amici/ThirdParty/sundials/src/sunnonlinsol/newton/fsunnonlinsol_newton.c
amici/ThirdParty/sundials/src/sunnonlinsol/newton/fsunnonlinsol_newton.h
amici/ThirdParty/sundials/src/sunnonlinsol/newton/sunnonlinsol_newton.c
amici/ThirdParty/sundials/src/sunnonlinsol/newton/fmod/fsunnonlinsol_newton_mod.c
amici/ThirdParty/sundials/src/sunnonlinsol/petscsnes/sunnonlinsol_petscsnes.c
amici/include/amici/abstract_model.h
amici/include/amici/amici.h
amici/include/amici/backwardproblem.h
amici/include/amici/cblas.h
amici/include/amici/defines.h
amici/include/amici/edata.h
amici/include/amici/exception.h
amici/include/amici/forwardproblem.h
amici/include/amici/hdf5.h
amici/include/amici/interface_matlab.h
amici/include/amici/misc.h
amici/include/amici/model.h
amici/include/amici/model_dae.h
amici/include/amici/model_ode.h
amici/include/amici/newton_solver.h
amici/include/amici/rdata.h
amici/include/amici/returndata_matlab.h
amici/include/amici/serialization.h
amici/include/amici/solver.h
amici/include/amici/solver_cvodes.h
amici/include/amici/solver_idas.h
amici/include/amici/spline.h
amici/include/amici/steadystateproblem.h
amici/include/amici/sundials_linsol_wrapper.h
amici/include/amici/sundials_matrix_wrapper.h
amici/include/amici/symbolic_functions.h
amici/include/amici/vector.h
amici/include/amici/version.in.h
amici/src/CMakeLists.template.cmake
amici/src/abstract_model.cpp
amici/src/amici.cpp
amici/src/backwardproblem.cpp
amici/src/cblas.cpp
amici/src/edata.cpp
amici/src/exception.cpp
amici/src/forwardproblem.cpp
amici/src/hdf5.cpp
amici/src/main.template.cpp
amici/src/misc.cpp
amici/src/model.ODE_template.cpp
amici/src/model.cpp
amici/src/model_dae.cpp
amici/src/model_header.ODE_template.h
amici/src/model_ode.cpp
amici/src/newton_solver.cpp
amici/src/rdata.cpp
amici/src/solver.cpp
amici/src/solver_cvodes.cpp
amici/src/solver_idas.cpp
amici/src/spline.cpp
amici/src/steadystateproblem.cpp
amici/src/sundials_linsol_wrapper.cpp
amici/src/sundials_matrix_wrapper.cpp
amici/src/symbolic_functions.cpp
amici/src/vector.cpp
amici/src/wrapfunctions.ODE_template.h
amici/src/wrapfunctions.template.cpp
amici/swig/CMakeLists_model.cmake
amici/swig/abstract_model.i
amici/swig/amici.i
amici/swig/edata.i
amici/swig/hdf5.i
amici/swig/misc.i
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amici/swig/model_ode.i
amici/swig/modelname.template.i
amici/swig/rdata.i
amici/swig/solver.i
amici/swig/solver_cvodes.i
amici/swig/solver_idas.i
amici/swig/std_unique_ptr.i
amici/swig/stdvec2numpy.h