Metadata-Version: 2.1
Name: prfect
Version: 0.10
Summary: A tool to predict programmed ribosomal frameshifts
Home-page: https://github.com/deprekate/prfect
Author: Katelyn McNair
Author-email: deprekate@gmail.com
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Operating System :: OS Independent
Requires-Python: >3.5.2
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: sklearn
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: genbank
Requires-Dist: LinearFold
Requires-Dist: hotknots
Requires-Dist: score-rbs

# prfect


```
python3 prfect.py test/phiX174.gbk
```
and the output are the various heptamer slippery sequences followed by the mfe
```
3123 3224 gaaaaa -11.2
3123 3224 aaaaat -10.8
3123 3224 aaaatt -9.9
3123 3224 ggaaaa -8.6
3199 3309 ggaaaa -8.6
3199 3309 aaaatt -11.3
3199 3309 caaaaa -16.8
3199 3309 aaaaac -17.2
3890 3936 caaaaa -15.7
3890 3936 aaaaat -15.3
3890 3936 aaaatt -15.3
```
