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"meth_chh": 1349951.0, "meth_chg": 382486.0, "percent_cpg_meth": 77.2, "strand_ctot": 0.0, "discarded_reads": 4.0, "total_c": 326018397.0, "total_reads": 20400069.0, "aligned_reads": 17482188.0, "meth_cpg": 9840690.0, "percent_aligned": 85.69671014348039, "strand_ob": 8711692.0, "strand_ot": 8770492.0, "unmeth_cpg": 2899152.0, "unmeth_chh": 242580642.0, "strand_directional": "directional", "unmeth_chg": 68965476.0, "strand_ctob": 0.0, "percent_chg_meth": 0.6}, "MethylC-Seq_mm_fc_1wk_SRR921767_1": {"ambig_reads": 10874570.0, "percent_chh_meth": 0.5, "no_alignments": 3096960.0, "meth_chh": 6627385.0, "meth_chg": 1872919.0, "percent_cpg_meth": 77.2, "strand_ctot": 0.0, "discarded_reads": 40.0, "total_c": 1609945962.0, "total_reads": 99942367.0, "aligned_reads": 85970837.0, "meth_cpg": 48410817.0, "percent_aligned": 86.02041314470769, "strand_ob": 42865443.0, "strand_ot": 43105354.0, "unmeth_cpg": 14337271.0, "unmeth_chh": 1198450302.0, "strand_directional": "directional", "unmeth_chg": 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{"ambig_reads": 16932038.0, "percent_chh_meth": 1.1, "no_alignments": 9698581.0, "meth_chh": 11271838.0, "meth_chg": 3485852.0, "percent_cpg_meth": 76.3, "strand_ctot": 0.0, "discarded_reads": 6.0, "total_c": 1442198467.0, "total_reads": 116247060.0, "aligned_reads": 89616441.0, "meth_cpg": 60606273.0, "percent_aligned": 77.09136127829814, "strand_ob": 44313762.0, "strand_ot": 45302673.0, "unmeth_cpg": 18830815.0, "unmeth_chh": 980597710.0, "strand_directional": "directional", "unmeth_chg": 367405979.0, "strand_ctob": 0.0, "percent_chg_meth": 0.9}, "MethylC-Seq_mm_fc_1wk_SRR921770_1": {"ambig_reads": 10884757.0, "percent_chh_meth": 0.5, "no_alignments": 3179359.0, "meth_chh": 6602284.0, "meth_chg": 1872979.0, "percent_cpg_meth": 77.1, "strand_ctot": 0.0, "discarded_reads": 26.0, "total_c": 1604547987.0, "total_reads": 99944444.0, "aligned_reads": 85880328.0, "meth_cpg": 48204032.0, "percent_aligned": 85.9280661964561, "strand_ob": 42819247.0, "strand_ot": 43061055.0, "unmeth_cpg": 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"Percentage_Ditags_Passed_Through_HiCUP": 6.92, "Valid_Pairs": 16389479.0, "Failed_To_Align_Read_1": 4964750.0, "Failed_To_Align_Read_2": 5279528.0, "Same_Dangling_Ends": 8148030.0, "Deduplication_Cis_Far_Uniques": 2480624.0, "Not_Truncated_Reads_2": 57958038.0, "Unique_Alignments_Read_1": 52564749.0, "Invalid_Pairs": 27672257.0, "Not_Truncated_Reads_1": 58000756.0, "Contiguous_Sequence": 222556.0, "Deduplication_Cis_Close_Uniques": 838257.0, "Wrong_Size": 990599.0, "Average_Length_Truncated_1": 68.33, "Average_Length_Truncated_2": 69.35, "Percentage_Valid": 37.2, "Paired_Read_2": 44061736.0, "Paired_Read_1": 44061736.0, "Same_Circularised": 1414759.0, "Deduplication_Read_Pairs_Uniques": 4912154.0, "Percentage_Unique_Trans": 32.44, "Unique_Alignments_Read_2": 52344645.0}, "Sample-2.A005.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 2014283.0, "Truncated_Read_1": 15713641.0, "Truncated_Read_2": 15364288.0, "Percentage_Mapped": 61.23, "Same_Fragment_Internal": 1178281.0, 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"Deduplication_Read_Pairs_Uniques": 21256588.0, "Percentage_Unique_Trans": 9.81, "Unique_Alignments_Read_2": 36071030.0}, "Sample-1.A007.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 50974.0, "Truncated_Read_1": 6212988.0, "Truncated_Read_2": 6187239.0, "Percentage_Mapped": 47.17, "Same_Fragment_Internal": 4031859.0, "Multiple_Alignments_Read_2": 4140992.0, "Multiple_Alignments_Read_1": 4263821.0, "Re_Ligation": 771757.0, "Percentage_Uniques": 99.27, "Total_Reads_1": 31000250.0, "Total_Reads_2": 31000250.0, "Too_Short_To_Map_Read_1": 368533.0, "Too_Short_To_Map_Read_2": 338254.0, "Deduplication_Trans_Uniques": 1510250.0, "Percentage_Ditags_Passed_Through_HiCUP": 22.51, "Valid_Pairs": 7029431.0, "Failed_To_Align_Read_1": 4040409.0, "Failed_To_Align_Read_2": 4692778.0, "Same_Dangling_Ends": 452563.0, "Deduplication_Cis_Far_Uniques": 4591811.0, "Not_Truncated_Reads_2": 24813011.0, "Unique_Alignments_Read_1": 22327487.0, "Invalid_Pairs": 7592082.0, "Not_Truncated_Reads_1": 24787262.0, "Contiguous_Sequence": 37367.0, "Deduplication_Cis_Close_Uniques": 876396.0, "Wrong_Size": 2141295.0, "Average_Length_Truncated_1": 65.01, "Average_Length_Truncated_2": 65.94, "Percentage_Valid": 48.08, "Paired_Read_2": 14621513.0, "Paired_Read_1": 14621513.0, "Same_Circularised": 157241.0, "Deduplication_Read_Pairs_Uniques": 6978457.0, "Percentage_Unique_Trans": 21.64, "Unique_Alignments_Read_2": 21828226.0}, "Sample-2.A006.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 3154622.0, "Truncated_Read_1": 20124177.0, "Truncated_Read_2": 19883308.0, "Percentage_Mapped": 59.57, "Same_Fragment_Internal": 1777624.0, "Multiple_Alignments_Read_2": 8749902.0, "Multiple_Alignments_Read_1": 8818185.0, "Re_Ligation": 2867016.0, "Percentage_Uniques": 87.14, "Total_Reads_1": 52316898.0, "Total_Reads_2": 52316898.0, "Too_Short_To_Map_Read_1": 962947.0, "Too_Short_To_Map_Read_2": 914822.0, "Deduplication_Trans_Uniques": 2097808.0, "Percentage_Ditags_Passed_Through_HiCUP": 40.86, "Valid_Pairs": 24532872.0, "Failed_To_Align_Read_1": 3214004.0, "Failed_To_Align_Read_2": 3539241.0, "Same_Dangling_Ends": 466229.0, "Deduplication_Cis_Far_Uniques": 14724374.0, "Not_Truncated_Reads_2": 32433590.0, "Unique_Alignments_Read_1": 39321762.0, "Invalid_Pairs": 6630172.0, "Not_Truncated_Reads_1": 32192721.0, "Contiguous_Sequence": 207732.0, "Deduplication_Cis_Close_Uniques": 4556068.0, "Wrong_Size": 969194.0, "Average_Length_Truncated_1": 66.11, "Average_Length_Truncated_2": 66.83, "Percentage_Valid": 78.72, "Paired_Read_2": 31163044.0, "Paired_Read_1": 31163044.0, "Same_Circularised": 342377.0, "Deduplication_Read_Pairs_Uniques": 21378250.0, "Percentage_Unique_Trans": 9.81, "Unique_Alignments_Read_2": 39112933.0}, "Sample-1.A002.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 70922.0, "Truncated_Read_1": 7548969.0, "Truncated_Read_2": 7446167.0, "Percentage_Mapped": 50.02, "Same_Fragment_Internal": 2442480.0, "Multiple_Alignments_Read_2": 4336149.0, "Multiple_Alignments_Read_1": 4475271.0, 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20505141.0}, "Sample-1.A012.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 95897.0, "Truncated_Read_1": 8999621.0, "Truncated_Read_2": 9050477.0, "Percentage_Mapped": 53.76, "Same_Fragment_Internal": 3810160.0, "Multiple_Alignments_Read_2": 5264577.0, "Multiple_Alignments_Read_1": 5362349.0, "Re_Ligation": 976378.0, "Percentage_Uniques": 99.18, "Total_Reads_1": 35472550.0, "Total_Reads_2": 35472550.0, "Too_Short_To_Map_Read_1": 526747.0, "Too_Short_To_Map_Read_2": 494718.0, "Deduplication_Trans_Uniques": 3345199.0, "Percentage_Ditags_Passed_Through_HiCUP": 32.73, "Valid_Pairs": 11705308.0, "Failed_To_Align_Read_1": 3079163.0, "Failed_To_Align_Read_2": 3571033.0, "Same_Dangling_Ends": 663463.0, "Deduplication_Cis_Far_Uniques": 7003201.0, "Not_Truncated_Reads_2": 26422073.0, "Unique_Alignments_Read_1": 26504291.0, "Invalid_Pairs": 7365147.0, "Not_Truncated_Reads_1": 26472929.0, "Contiguous_Sequence": 55368.0, "Deduplication_Cis_Close_Uniques": 1261011.0, "Wrong_Size": 1695910.0, 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47111116.0, "Too_Short_To_Map_Read_1": 836605.0, "Too_Short_To_Map_Read_2": 786618.0, "Deduplication_Trans_Uniques": 2015823.0, "Percentage_Ditags_Passed_Through_HiCUP": 43.69, "Valid_Pairs": 22513818.0, "Failed_To_Align_Read_1": 1842812.0, "Failed_To_Align_Read_2": 2394529.0, "Same_Dangling_Ends": 459609.0, "Deduplication_Cis_Far_Uniques": 14095464.0, "Not_Truncated_Reads_2": 31646350.0, "Unique_Alignments_Read_1": 36086617.0, "Invalid_Pairs": 6031083.0, "Not_Truncated_Reads_1": 31237828.0, "Contiguous_Sequence": 194022.0, "Deduplication_Cis_Close_Uniques": 4471280.0, "Wrong_Size": 1010279.0, "Average_Length_Truncated_1": 65.43, "Average_Length_Truncated_2": 66.06, "Percentage_Valid": 78.87, "Paired_Read_2": 28544901.0, "Paired_Read_1": 28544901.0, "Same_Circularised": 308462.0, "Deduplication_Read_Pairs_Uniques": 20582567.0, "Percentage_Unique_Trans": 9.79, "Unique_Alignments_Read_2": 35678265.0}, "Sample-1.A006.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 108388.0, "Truncated_Read_1": 10420308.0, "Truncated_Read_2": 10523907.0, "Percentage_Mapped": 53.15, "Same_Fragment_Internal": 2075370.0, "Multiple_Alignments_Read_2": 5121683.0, "Multiple_Alignments_Read_1": 5230796.0, "Re_Ligation": 961388.0, "Percentage_Uniques": 99.17, "Total_Reads_1": 34760244.0, "Total_Reads_2": 34760244.0, "Too_Short_To_Map_Read_1": 579570.0, "Too_Short_To_Map_Read_2": 539500.0, "Deduplication_Trans_Uniques": 2846491.0, "Percentage_Ditags_Passed_Through_HiCUP": 37.39, "Valid_Pairs": 13106391.0, "Failed_To_Align_Read_1": 3023668.0, "Failed_To_Align_Read_2": 3461805.0, "Same_Dangling_Ends": 408217.0, "Deduplication_Cis_Far_Uniques": 8107586.0, "Not_Truncated_Reads_2": 24236337.0, "Unique_Alignments_Read_1": 25926210.0, "Invalid_Pairs": 5367175.0, "Not_Truncated_Reads_1": 24339936.0, "Contiguous_Sequence": 65086.0, "Deduplication_Cis_Close_Uniques": 2043926.0, "Wrong_Size": 1636587.0, "Average_Length_Truncated_1": 65.67, "Average_Length_Truncated_2": 66.68, "Percentage_Valid": 70.95, "Paired_Read_2": 18473566.0, "Paired_Read_1": 18473566.0, "Same_Circularised": 220527.0, "Deduplication_Read_Pairs_Uniques": 12998003.0, "Percentage_Unique_Trans": 21.9, "Unique_Alignments_Read_2": 25637256.0}, "Sample-1.A005.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 95304.0, "Truncated_Read_1": 8361813.0, "Truncated_Read_2": 8436781.0, "Percentage_Mapped": 56.93, "Same_Fragment_Internal": 1580105.0, "Multiple_Alignments_Read_2": 4167422.0, "Multiple_Alignments_Read_1": 4263954.0, "Re_Ligation": 924315.0, "Percentage_Uniques": 99.16, "Total_Reads_1": 26780491.0, "Total_Reads_2": 26780491.0, "Too_Short_To_Map_Read_1": 431302.0, "Too_Short_To_Map_Read_2": 407260.0, "Deduplication_Trans_Uniques": 2480465.0, "Percentage_Ditags_Passed_Through_HiCUP": 41.89, "Valid_Pairs": 11314841.0, "Failed_To_Align_Read_1": 1706094.0, "Failed_To_Align_Read_2": 2134064.0, "Same_Dangling_Ends": 298334.0, "Deduplication_Cis_Far_Uniques": 7243835.0, "Not_Truncated_Reads_2": 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58000756.0, "Contiguous_Sequence": 222556.0, "Deduplication_Cis_Close_Uniques": 838257.0, "Wrong_Size": 990599.0, "Average_Length_Truncated_1": 68.33, "Average_Length_Truncated_2": 69.35, "Percentage_Valid": 37.2, "Paired_Read_2": 44061736.0, "Paired_Read_1": 44061736.0, "Same_Circularised": 1414759.0, "Deduplication_Read_Pairs_Uniques": 4912154.0, "Percentage_Unique_Trans": 32.44, "Unique_Alignments_Read_2": 52344645.0}, "Sample-2.A005.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 2014283.0, "Truncated_Read_1": 15713641.0, "Truncated_Read_2": 15364288.0, "Percentage_Mapped": 61.23, "Same_Fragment_Internal": 1178281.0, "Multiple_Alignments_Read_2": 8217328.0, "Multiple_Alignments_Read_1": 8302457.0, "Re_Ligation": 2622262.0, "Percentage_Uniques": 91.34, "Total_Reads_1": 47405891.0, "Total_Reads_2": 47405891.0, "Too_Short_To_Map_Read_1": 774880.0, "Too_Short_To_Map_Read_2": 730807.0, "Deduplication_Trans_Uniques": 2086037.0, "Percentage_Ditags_Passed_Through_HiCUP": 44.84, "Valid_Pairs": 23270871.0, "Failed_To_Align_Read_1": 1890022.0, "Failed_To_Align_Read_2": 2386726.0, "Same_Dangling_Ends": 387458.0, "Deduplication_Cis_Far_Uniques": 14571759.0, "Not_Truncated_Reads_2": 32041603.0, "Unique_Alignments_Read_1": 36438532.0, "Invalid_Pairs": 5756268.0, "Not_Truncated_Reads_1": 31692250.0, "Contiguous_Sequence": 199562.0, "Deduplication_Cis_Close_Uniques": 4598792.0, "Wrong_Size": 1046065.0, "Average_Length_Truncated_1": 66.87, "Average_Length_Truncated_2": 67.53, "Percentage_Valid": 80.17, "Paired_Read_2": 29027139.0, "Paired_Read_1": 29027139.0, "Same_Circularised": 322640.0, "Deduplication_Read_Pairs_Uniques": 21256588.0, "Percentage_Unique_Trans": 9.81, "Unique_Alignments_Read_2": 36071030.0}, "Sample-1.A007.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 50974.0, "Truncated_Read_1": 6212988.0, "Truncated_Read_2": 6187239.0, "Percentage_Mapped": 47.17, "Same_Fragment_Internal": 4031859.0, "Multiple_Alignments_Read_2": 4140992.0, "Multiple_Alignments_Read_1": 4263821.0, "Re_Ligation": 771757.0, "Percentage_Uniques": 99.27, "Total_Reads_1": 31000250.0, "Total_Reads_2": 31000250.0, "Too_Short_To_Map_Read_1": 368533.0, "Too_Short_To_Map_Read_2": 338254.0, "Deduplication_Trans_Uniques": 1510250.0, "Percentage_Ditags_Passed_Through_HiCUP": 22.51, "Valid_Pairs": 7029431.0, "Failed_To_Align_Read_1": 4040409.0, "Failed_To_Align_Read_2": 4692778.0, "Same_Dangling_Ends": 452563.0, "Deduplication_Cis_Far_Uniques": 4591811.0, "Not_Truncated_Reads_2": 24813011.0, "Unique_Alignments_Read_1": 22327487.0, "Invalid_Pairs": 7592082.0, "Not_Truncated_Reads_1": 24787262.0, "Contiguous_Sequence": 37367.0, "Deduplication_Cis_Close_Uniques": 876396.0, "Wrong_Size": 2141295.0, "Average_Length_Truncated_1": 65.01, "Average_Length_Truncated_2": 65.94, "Percentage_Valid": 48.08, "Paired_Read_2": 14621513.0, "Paired_Read_1": 14621513.0, "Same_Circularised": 157241.0, "Deduplication_Read_Pairs_Uniques": 6978457.0, "Percentage_Unique_Trans": 21.64, "Unique_Alignments_Read_2": 21828226.0}, "Sample-2.A006.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 3154622.0, "Truncated_Read_1": 20124177.0, "Truncated_Read_2": 19883308.0, "Percentage_Mapped": 59.57, "Same_Fragment_Internal": 1777624.0, "Multiple_Alignments_Read_2": 8749902.0, "Multiple_Alignments_Read_1": 8818185.0, "Re_Ligation": 2867016.0, "Percentage_Uniques": 87.14, "Total_Reads_1": 52316898.0, "Total_Reads_2": 52316898.0, "Too_Short_To_Map_Read_1": 962947.0, "Too_Short_To_Map_Read_2": 914822.0, "Deduplication_Trans_Uniques": 2097808.0, "Percentage_Ditags_Passed_Through_HiCUP": 40.86, "Valid_Pairs": 24532872.0, "Failed_To_Align_Read_1": 3214004.0, "Failed_To_Align_Read_2": 3539241.0, "Same_Dangling_Ends": 466229.0, "Deduplication_Cis_Far_Uniques": 14724374.0, "Not_Truncated_Reads_2": 32433590.0, "Unique_Alignments_Read_1": 39321762.0, "Invalid_Pairs": 6630172.0, "Not_Truncated_Reads_1": 32192721.0, "Contiguous_Sequence": 207732.0, "Deduplication_Cis_Close_Uniques": 4556068.0, "Wrong_Size": 969194.0, "Average_Length_Truncated_1": 66.11, "Average_Length_Truncated_2": 66.83, "Percentage_Valid": 78.72, "Paired_Read_2": 31163044.0, "Paired_Read_1": 31163044.0, "Same_Circularised": 342377.0, "Deduplication_Read_Pairs_Uniques": 21378250.0, "Percentage_Unique_Trans": 9.81, "Unique_Alignments_Read_2": 39112933.0}, "Sample-1.A002.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 70922.0, "Truncated_Read_1": 7548969.0, "Truncated_Read_2": 7446167.0, "Percentage_Mapped": 50.02, "Same_Fragment_Internal": 2442480.0, "Multiple_Alignments_Read_2": 4336149.0, "Multiple_Alignments_Read_1": 4475271.0, "Re_Ligation": 834795.0, "Percentage_Uniques": 99.21, "Total_Reads_1": 28754600.0, "Total_Reads_2": 28754600.0, "Too_Short_To_Map_Read_1": 751623.0, "Too_Short_To_Map_Read_2": 698375.0, "Deduplication_Trans_Uniques": 1962673.0, "Percentage_Ditags_Passed_Through_HiCUP": 30.83, "Valid_Pairs": 8935388.0, "Failed_To_Align_Read_1": 2454861.0, "Failed_To_Align_Read_2": 3214935.0, "Same_Dangling_Ends": 530246.0, "Deduplication_Cis_Far_Uniques": 5742469.0, "Not_Truncated_Reads_2": 21308433.0, "Unique_Alignments_Read_1": 21072845.0, "Invalid_Pairs": 5447810.0, "Not_Truncated_Reads_1": 21205631.0, "Contiguous_Sequence": 48328.0, "Deduplication_Cis_Close_Uniques": 1159324.0, "Wrong_Size": 1455874.0, "Average_Length_Truncated_1": 58.69, "Average_Length_Truncated_2": 59.65, "Percentage_Valid": 62.12, "Paired_Read_2": 14383198.0, "Paired_Read_1": 14383198.0, "Same_Circularised": 136087.0, "Deduplication_Read_Pairs_Uniques": 8864466.0, "Percentage_Unique_Trans": 22.14, "Unique_Alignments_Read_2": 20505141.0}, "Sample-1.A012.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 95897.0, "Truncated_Read_1": 8999621.0, "Truncated_Read_2": 9050477.0, "Percentage_Mapped": 53.76, "Same_Fragment_Internal": 3810160.0, "Multiple_Alignments_Read_2": 5264577.0, "Multiple_Alignments_Read_1": 5362349.0, "Re_Ligation": 976378.0, "Percentage_Uniques": 99.18, "Total_Reads_1": 35472550.0, "Total_Reads_2": 35472550.0, "Too_Short_To_Map_Read_1": 526747.0, "Too_Short_To_Map_Read_2": 494718.0, "Deduplication_Trans_Uniques": 3345199.0, "Percentage_Ditags_Passed_Through_HiCUP": 32.73, "Valid_Pairs": 11705308.0, "Failed_To_Align_Read_1": 3079163.0, "Failed_To_Align_Read_2": 3571033.0, "Same_Dangling_Ends": 663463.0, "Deduplication_Cis_Far_Uniques": 7003201.0, "Not_Truncated_Reads_2": 26422073.0, "Unique_Alignments_Read_1": 26504291.0, "Invalid_Pairs": 7365147.0, "Not_Truncated_Reads_1": 26472929.0, "Contiguous_Sequence": 55368.0, "Deduplication_Cis_Close_Uniques": 1261011.0, "Wrong_Size": 1695910.0, "Average_Length_Truncated_1": 65.39, "Average_Length_Truncated_2": 66.3, "Percentage_Valid": 61.38, "Paired_Read_2": 19070455.0, "Paired_Read_1": 19070455.0, "Same_Circularised": 163868.0, "Deduplication_Read_Pairs_Uniques": 11609411.0, "Percentage_Unique_Trans": 28.81, "Unique_Alignments_Read_2": 26142222.0}, "Sample-2.A019.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 2767468.0, "Truncated_Read_1": 17059053.0, "Truncated_Read_2": 16958416.0, "Percentage_Mapped": 61.65, "Same_Fragment_Internal": 1577602.0, "Multiple_Alignments_Read_2": 7554610.0, "Multiple_Alignments_Read_1": 7620595.0, "Re_Ligation": 2509885.0, "Percentage_Uniques": 87.18, "Total_Reads_1": 44617077.0, "Total_Reads_2": 44617077.0, "Too_Short_To_Map_Read_1": 603703.0, "Too_Short_To_Map_Read_2": 578991.0, "Deduplication_Trans_Uniques": 1841894.0, "Percentage_Ditags_Passed_Through_HiCUP": 42.19, "Valid_Pairs": 21592114.0, "Failed_To_Align_Read_1": 2075078.0, "Failed_To_Align_Read_2": 2386791.0, "Same_Dangling_Ends": 502256.0, "Deduplication_Cis_Far_Uniques": 12927006.0, "Not_Truncated_Reads_2": 27658661.0, "Unique_Alignments_Read_1": 34317701.0, "Invalid_Pairs": 5915672.0, "Not_Truncated_Reads_1": 27558024.0, "Contiguous_Sequence": 182456.0, "Deduplication_Cis_Close_Uniques": 4055746.0, "Wrong_Size": 855272.0, "Average_Length_Truncated_1": 67.04, "Average_Length_Truncated_2": 67.71, "Percentage_Valid": 78.49, "Paired_Read_2": 27507786.0, "Paired_Read_1": 27507786.0, "Same_Circularised": 288201.0, "Deduplication_Read_Pairs_Uniques": 18824646.0, "Percentage_Unique_Trans": 9.78, "Unique_Alignments_Read_2": 34096685.0}, "Sample-1.A006.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 108388.0, "Truncated_Read_1": 10420308.0, "Truncated_Read_2": 10523907.0, "Percentage_Mapped": 53.15, "Same_Fragment_Internal": 2075370.0, "Multiple_Alignments_Read_2": 5121683.0, "Multiple_Alignments_Read_1": 5230796.0, "Re_Ligation": 961388.0, "Percentage_Uniques": 99.17, "Total_Reads_1": 34760244.0, "Total_Reads_2": 34760244.0, "Too_Short_To_Map_Read_1": 579570.0, "Too_Short_To_Map_Read_2": 539500.0, "Deduplication_Trans_Uniques": 2846491.0, "Percentage_Ditags_Passed_Through_HiCUP": 37.39, "Valid_Pairs": 13106391.0, "Failed_To_Align_Read_1": 3023668.0, "Failed_To_Align_Read_2": 3461805.0, "Same_Dangling_Ends": 408217.0, "Deduplication_Cis_Far_Uniques": 8107586.0, "Not_Truncated_Reads_2": 24236337.0, "Unique_Alignments_Read_1": 25926210.0, "Invalid_Pairs": 5367175.0, "Not_Truncated_Reads_1": 24339936.0, "Contiguous_Sequence": 65086.0, "Deduplication_Cis_Close_Uniques": 2043926.0, "Wrong_Size": 1636587.0, "Average_Length_Truncated_1": 65.67, "Average_Length_Truncated_2": 66.68, "Percentage_Valid": 70.95, "Paired_Read_2": 18473566.0, "Paired_Read_1": 18473566.0, "Same_Circularised": 220527.0, "Deduplication_Read_Pairs_Uniques": 12998003.0, "Percentage_Unique_Trans": 21.9, "Unique_Alignments_Read_2": 25637256.0}, "Sample-2.A002.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 1931251.0, "Truncated_Read_1": 15873288.0, "Truncated_Read_2": 15464766.0, "Percentage_Mapped": 60.59, "Same_Fragment_Internal": 1428287.0, "Multiple_Alignments_Read_2": 8251704.0, "Multiple_Alignments_Read_1": 8345082.0, "Re_Ligation": 2630424.0, "Percentage_Uniques": 91.42, "Total_Reads_1": 47111116.0, "Total_Reads_2": 47111116.0, "Too_Short_To_Map_Read_1": 836605.0, "Too_Short_To_Map_Read_2": 786618.0, "Deduplication_Trans_Uniques": 2015823.0, "Percentage_Ditags_Passed_Through_HiCUP": 43.69, "Valid_Pairs": 22513818.0, "Failed_To_Align_Read_1": 1842812.0, "Failed_To_Align_Read_2": 2394529.0, "Same_Dangling_Ends": 459609.0, "Deduplication_Cis_Far_Uniques": 14095464.0, "Not_Truncated_Reads_2": 31646350.0, "Unique_Alignments_Read_1": 36086617.0, "Invalid_Pairs": 6031083.0, "Not_Truncated_Reads_1": 31237828.0, "Contiguous_Sequence": 194022.0, "Deduplication_Cis_Close_Uniques": 4471280.0, "Wrong_Size": 1010279.0, "Average_Length_Truncated_1": 65.43, "Average_Length_Truncated_2": 66.06, "Percentage_Valid": 78.87, "Paired_Read_2": 28544901.0, "Paired_Read_1": 28544901.0, "Same_Circularised": 308462.0, "Deduplication_Read_Pairs_Uniques": 20582567.0, "Percentage_Unique_Trans": 9.79, "Unique_Alignments_Read_2": 35678265.0}, "Sample-1.A005.C8DRAANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 95304.0, "Truncated_Read_1": 8361813.0, "Truncated_Read_2": 8436781.0, "Percentage_Mapped": 56.93, "Same_Fragment_Internal": 1580105.0, "Multiple_Alignments_Read_2": 4167422.0, "Multiple_Alignments_Read_1": 4263954.0, "Re_Ligation": 924315.0, "Percentage_Uniques": 99.16, "Total_Reads_1": 26780491.0, "Total_Reads_2": 26780491.0, "Too_Short_To_Map_Read_1": 431302.0, "Too_Short_To_Map_Read_2": 407260.0, "Deduplication_Trans_Uniques": 2480465.0, "Percentage_Ditags_Passed_Through_HiCUP": 41.89, "Valid_Pairs": 11314841.0, "Failed_To_Align_Read_1": 1706094.0, "Failed_To_Align_Read_2": 2134064.0, "Same_Dangling_Ends": 298334.0, "Deduplication_Cis_Far_Uniques": 7243835.0, "Not_Truncated_Reads_2": 18343710.0, "Unique_Alignments_Read_1": 20379141.0, "Invalid_Pairs": 3930180.0, "Not_Truncated_Reads_1": 18418678.0, "Contiguous_Sequence": 59919.0, "Deduplication_Cis_Close_Uniques": 1495237.0, "Wrong_Size": 880271.0, "Average_Length_Truncated_1": 66.22, "Average_Length_Truncated_2": 67.02, "Percentage_Valid": 74.22, "Paired_Read_2": 15245021.0, "Paired_Read_1": 15245021.0, "Same_Circularised": 187236.0, "Deduplication_Read_Pairs_Uniques": 11219537.0, "Percentage_Unique_Trans": 22.11, "Unique_Alignments_Read_2": 20071745.0}, "Sample-3.A012.C8H0KANXX.s_2.r_1_2": {"Duplicate_Read_Pairs": 11778873.0, "Truncated_Read_1": 11713418.0, "Truncated_Read_2": 11677929.0, "Percentage_Mapped": 38.61, "Same_Fragment_Internal": 10511940.0, "Multiple_Alignments_Read_2": 10669903.0, "Multiple_Alignments_Read_1": 10775430.0, "Re_Ligation": 3796438.0, "Percentage_Uniques": 12.62, "Total_Reads_1": 88983957.0, "Total_Reads_2": 88983957.0, "Too_Short_To_Map_Read_1": 362269.0, "Too_Short_To_Map_Read_2": 343348.0, "Deduplication_Trans_Uniques": 757012.0, "Percentage_Ditags_Passed_Through_HiCUP": 1.91, "Valid_Pairs": 13479427.0, "Failed_To_Align_Read_1": 36829492.0, "Failed_To_Align_Read_2": 37301646.0, "Same_Dangling_Ends": 4687182.0, "Deduplication_Cis_Far_Uniques": 664459.0, "Not_Truncated_Reads_2": 77306028.0, "Unique_Alignments_Read_1": 41016766.0, "Invalid_Pairs": 20879819.0, "Not_Truncated_Reads_1": 77270539.0, "Contiguous_Sequence": 180685.0, "Deduplication_Cis_Close_Uniques": 279083.0, "Wrong_Size": 377188.0, "Average_Length_Truncated_1": 68.86, "Average_Length_Truncated_2": 69.83, "Percentage_Valid": 39.23, "Paired_Read_2": 34359246.0, "Paired_Read_1": 34359246.0, "Same_Circularised": 1326386.0, "Deduplication_Read_Pairs_Uniques": 1700554.0, "Percentage_Unique_Trans": 44.52, "Unique_Alignments_Read_2": 40669060.0}, "Sample-2.A012.C8LFMANXX.s_3.r_1_2": {"Duplicate_Read_Pairs": 944664.0, "Truncated_Read_1": 12832427.0, "Truncated_Read_2": 12458940.0, "Percentage_Mapped": 62.39, "Same_Fragment_Internal": 2016944.0, "Multiple_Alignments_Read_2": 7071302.0, "Multiple_Alignments_Read_1": 7182895.0, "Re_Ligation": 2664241.0, "Percentage_Uniques": 95.36, "Total_Reads_1": 43542862.0, "Total_Reads_2": 43542862.0, "Too_Short_To_Map_Read_1": 589333.0, "Too_Short_To_Map_Read_2": 546108.0, 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