HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
bionumpy/__init__.py
bionumpy/computation_graph.py
bionumpy/encoded_array.py
bionumpy.egg-info/PKG-INFO
bionumpy.egg-info/SOURCES.txt
bionumpy.egg-info/dependency_links.txt
bionumpy.egg-info/entry_points.txt
bionumpy.egg-info/not-zip-safe
bionumpy.egg-info/requires.txt
bionumpy.egg-info/top_level.txt
bionumpy/alignments/__init__.py
bionumpy/alignments/cigar.py
bionumpy/arithmetics/__init__.py
bionumpy/arithmetics/bedgraph.py
bionumpy/arithmetics/intervals.py
bionumpy/arithmetics/similarity_measures.py
bionumpy/bnpdataclass/__init__.py
bionumpy/bnpdataclass/bnpdataclass.py
bionumpy/bnpdataclass/bnpdataclassfunction.py
bionumpy/cupy_compatible/__init__.py
bionumpy/cupy_compatible/parser.py
bionumpy/datatypes/__init__.py
bionumpy/datatypes/gtf.py
bionumpy/encodings/__init__.py
bionumpy/encodings/_legacy_encodings.py
bionumpy/encodings/alphabet_encoding.py
bionumpy/encodings/base_encoding.py
bionumpy/encodings/exceptions.py
bionumpy/encodings/kmer_encodings.py
bionumpy/encodings/string_encodings.py
bionumpy/encodings/vcf_encoding.py
bionumpy/genomic_data/__init__.py
bionumpy/genomic_data/annotation.py
bionumpy/genomic_data/genome.py
bionumpy/genomic_data/genome_context.py
bionumpy/genomic_data/genome_context_base.py
bionumpy/genomic_data/genomic_data.py
bionumpy/genomic_data/genomic_intervals.py
bionumpy/genomic_data/genomic_sequence.py
bionumpy/genomic_data/genomic_track.py
bionumpy/genomic_data/geometry.py
bionumpy/genomic_data/global_offset.py
bionumpy/io/__init__.py
bionumpy/io/bam.py
bionumpy/io/delimited_buffers.py
bionumpy/io/dump_csv.py
bionumpy/io/exceptions.py
bionumpy/io/file_buffers.py
bionumpy/io/files.py
bionumpy/io/gfa.py
bionumpy/io/headers.py
bionumpy/io/indexed_fasta.py
bionumpy/io/indexed_files.py
bionumpy/io/jaspar.py
bionumpy/io/matrix_dump.py
bionumpy/io/motifs.py
bionumpy/io/multiline_buffer.py
bionumpy/io/npdataclassreader.py
bionumpy/io/parser.py
bionumpy/io/regexp.py
bionumpy/io/strops.py
bionumpy/io/wig.py
bionumpy/sequence/__init__.py
bionumpy/sequence/count_encoded.py
bionumpy/sequence/dna.py
bionumpy/sequence/genes.py
bionumpy/sequence/kmers.py
bionumpy/sequence/lookup.py
bionumpy/sequence/minimizers.py
bionumpy/sequence/position_weight_matrix.py
bionumpy/sequence/rollable.py
bionumpy/sequence/string_matcher.py
bionumpy/sequence/translate.py
bionumpy/sequence/indexing/__init__.py
bionumpy/sequence/indexing/kmer_indexing.py
bionumpy/sequence/indexing/wildcard_index.py
bionumpy/simulate/__init__.py
bionumpy/simulate/chipseq.py
bionumpy/simulate/intervals.py
bionumpy/simulate/rnaseq.py
bionumpy/simulate/rng.py
bionumpy/simulate/sequences.py
bionumpy/simulate/test_simulate_intervals.py
bionumpy/streams/__init__.py
bionumpy/streams/chunk_entries.py
bionumpy/streams/decorators.py
bionumpy/streams/groupby_func.py
bionumpy/streams/grouped.py
bionumpy/streams/left_join.py
bionumpy/streams/multistream.py
bionumpy/streams/reductions.py
bionumpy/streams/stream.py
bionumpy/util/__init__.py
bionumpy/util/ascii_hash.py
bionumpy/util/cli.py
bionumpy/util/formating.py
bionumpy/util/testing.py
bionumpy/util/typing.py
bionumpy/variants/__init__.py
bionumpy/variants/mutation_signature.py
tests/__init__.py
tests/buffers.py
tests/gfa_test.py
tests/test_asciihash.py
tests/test_bam.py
tests/test_bionumpy.py
tests/test_bnpdataclass.py
tests/test_chromosome_provider.py
tests/test_computation_graph.py
tests/test_delimited_buffers.py
tests/test_dna.py
tests/test_encoded_array.py
tests/test_encodedarrayfunctions.py
tests/test_encodedcounts.py
tests/test_encodings.py
tests/test_entry_chunker.py
tests/test_formating.py
tests/test_genomic_annotation.py
tests/test_genomic_data.py
tests/test_genomic_sequence.py
tests/test_genomic_track.py
tests/test_geometry.py
tests/test_global_offset.py
tests/test_groupby.py
tests/test_gtf.py
tests/test_indexed_fasta.py
tests/test_integration.py
tests/test_intervals.py
tests/test_io.py
tests/test_io_exceptions.py
tests/test_kmer.py
tests/test_kmer_index.py
tests/test_kmer_nmf.py
tests/test_minimizers.py
tests/test_multistream.py
tests/test_npdataclassstream.py
tests/test_parsers.py
tests/test_pileup.py
tests/test_position_weight_matrix.py
tests/test_regexp.py
tests/test_rollable.py
tests/test_seqeunces.py
tests/test_similarity_measures.py
tests/test_simulate.py
tests/test_streambroadcast.py
tests/test_streams.py
tests/test_string_encodings.py
tests/test_string_matcher.py
tests/test_strops.py
tests/test_translate.py
tests/test_util.py
tests/test_vcf.py
tests/test_vcf_encoding.py
tests/test_wig.py
tests/test_wildcard_index.py
tests/performance/interval_sort.py
tests/property_tests/__init__.py
tests/property_tests/strategies.py
tests/property_tests/test_delimited_buffers.py
tests/property_tests/test_encodings.py
tests/property_tests/test_strops.py