.coveragerc
.docstr.yaml
.gitignore
.gitlab-ci.yml
.isort.cfg
.pre-commit-config.yaml
.readthedocs.yml
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE.txt
README.rst
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/workflows/ci.yml
container/nbnode_py38_cpu.dockerfile
docs/Makefile
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/license.rst
docs/notebooks.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
docs/_templates/layout.html
docs/notebooks/nbnode-01.ipynb
docs/notebooks/nbnode-02.ipynb
docs/notebooks/nbnode-03.ipynb
docs/notebooks/nbnode-04.ipynb
docs/notebooks/nbnode-05_sim.ipynb
src/nbnode/__init__.py
src/nbnode/nbnode.py
src/nbnode/nbnode_trees.py
src/nbnode/nbnode_util.py
src/nbnode.egg-info/PKG-INFO
src/nbnode.egg-info/SOURCES.txt
src/nbnode.egg-info/dependency_links.txt
src/nbnode.egg-info/not-zip-safe
src/nbnode.egg-info/requires.txt
src/nbnode.egg-info/top_level.txt
src/nbnode/apply/__init__.py
src/nbnode/apply/count_celltree_df.py
src/nbnode/apply/gate_csv.py
src/nbnode/apply/gate_pointcloud.py
src/nbnode/io/__init__.py
src/nbnode/io/pickle_open_dump.py
src/nbnode/plot/__init__.py
src/nbnode/plot/shifted_colormap.py
src/nbnode/plot/utils.py
src/nbnode/simulation/FlowSimulationTree.py
src/nbnode/simulation/TreeMeanDistributionSampler.py
src/nbnode/simulation/TreeMeanRelative.py
src/nbnode/simulation/__init__.py
src/nbnode/simulation/sim_proportional.py
src/nbnode/simulation/sim_target.py
src/nbnode/specific_analyses/__init__.py
src/nbnode/specific_analyses/intraassay/__init__.py
src/nbnode/specific_analyses/intraassay/gate_init.py
src/nbnode/specific_analyses/intraassay/sims/__init__.py
src/nbnode/specific_analyses/intraassay/sims/sim00.py
src/nbnode/specific_analyses/intraassay/sims/sim01.py
src/nbnode/specific_analyses/intraassay/sims/sim02.py
src/nbnode/specific_analyses/intraassay/sims/sim03.py
src/nbnode/testutil/__init__.py
src/nbnode/testutil/get_licenses.py
src/nbnode/testutil/helpers.py
src/nbnode/utils/__init__.py
src/nbnode/utils/merge_leaf_nodes.py
tests/__init__.py
tests/conftest.py
tests/test_NBNode.py
tests/test_nbnode_trees.py
tests/_io/__init__.py
tests/_io/test_pickle_open_dump.py
tests/plot/__init__.py
tests/plot/test_shifted_colormap.py
tests/plot/test_utils.py
tests/simulation/__init__.py
tests/simulation/test_FlowSimulationTree.py
tests/simulation/test_TreeMeans.py
tests/specific_analyses/__init__.py
tests/specific_analyses/e01_download_intraassay.sh
tests/specific_analyses/e02_download_intraassay_zenodo.py
tests/specific_analyses/e03_download_intraassay_zenodo_zip.py
tests/specific_analyses/test_intraassay.py
tests/testdata/flowcytometry/flowsim_tree.pickle
tests/testdata/flowcytometry/gated_cells/README.py
tests/testdata/flowcytometry/gated_cells/cellmat.csv
tests/testdata/flowcytometry/gated_cells/ybinary.csv
tests/testdata/flowcytometry/gated_cells/yternary.csv
tests/utils/__init__.py
tests/utils/test_merge_leaf_nodes.py
tests/utils/test_nbnode_util.py