Metadata-Version: 2.4
Name: bioshell
Version: 0.1.2
Summary: A CLI tool to generate Biopython lab exercise scripts with theory
Author-email: jfc <hamza@jaskirat.com>
License: MIT
Project-URL: Homepage, https://github.com/jfc/bioshell
Keywords: biopython,bioinformatics,education,cli,jfc,bioshell
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Requires-Dist: biopython>=1.80

# Bioshell

A command-line tool to generate Biopython scripts for lab exercises, created by **jfc**.

## Installation

```bash
pip install bioshell
```

## Usage

Run the following command to open the menu:

```bash
bioshell
```

Choose a program index from the menu. The tool will:
1. Create a Python file in your current directory.
2. Include the theory in the comments of that file.
3. Provide instructions on how to run it.

## Programs Included:
1. Basic Sequence Operations
2. Read Sequence Data from FASTA
3. Write Sequence Data to GenBank
4. Convert FASTA to GenBank
5. SeqRecord Annotations and Features
6. Fetch Data from NCBI (Entrez)
7. Pairwise Sequence Alignment
8. Multiple Sequence Alignment (MUSCLE)
9. Constructing Phylogenetic Trees
10. Protein Structure Visualization (PDB)

---
Developed by jfc (hamza@jaskirat.com)
