MANIFEST.in
README.md
setup.py
docs/tutorials/ch3.pdb
mbuild/__init__.py
mbuild/atb_client.py
mbuild/bond_graph.py
mbuild/box.py
mbuild/coarse_graining.py
mbuild/compound.py
mbuild/coordinate_transform.py
mbuild/exceptions.py
mbuild/lattice.py
mbuild/packing.py
mbuild/pattern.py
mbuild/periodic_kdtree.py
mbuild/port.py
mbuild/version.py
mbuild.egg-info/PKG-INFO
mbuild.egg-info/SOURCES.txt
mbuild.egg-info/dependency_links.txt
mbuild.egg-info/entry_points.txt
mbuild.egg-info/not-zip-safe
mbuild.egg-info/top_level.txt
mbuild/examples/__init__.py
mbuild/examples/test_examples.py
mbuild/examples/alkane/__init__.py
mbuild/examples/alkane/alkane.py
mbuild/examples/alkane_monolayer/__init__.py
mbuild/examples/alkane_monolayer/alkane_monolayer.py
mbuild/examples/alkane_monolayer/alkylsilane.py
mbuild/examples/bilayer/__init__.py
mbuild/examples/bilayer/bilayer.py
mbuild/examples/coarse_graining/__init__.py
mbuild/examples/coarse_graining/cg_hexane.py
mbuild/examples/coarse_graining/hexane_box.py
mbuild/examples/ethane/__init__.py
mbuild/examples/ethane/ethane.py
mbuild/examples/lennard_jones/__init__.py
mbuild/examples/lennard_jones/monolj.py
mbuild/examples/methane/__init__.py
mbuild/examples/methane/methane.py
mbuild/examples/pmpc/__init__.py
mbuild/examples/pmpc/brush.py
mbuild/examples/pmpc/initiator.pdb
mbuild/examples/pmpc/initiator.py
mbuild/examples/pmpc/mpc.pdb
mbuild/examples/pmpc/mpc.py
mbuild/examples/pmpc/pmpc_brush_layer.py
mbuild/examples/reload/__init__.py
mbuild/examples/solvate/__init__.py
mbuild/examples/tnp/__init__.py
mbuild/examples/tnp/bead.py
mbuild/examples/tnp/sphere.py
mbuild/examples/tnp/tnp.py
mbuild/formats/__init__.py
mbuild/formats/gsdwriter.py
mbuild/formats/hoomdxml.py
mbuild/formats/json_formats.py
mbuild/formats/lammpsdata.py
mbuild/formats/par_writer.py
mbuild/formats/protobuf.py
mbuild/formats/vasp.py
mbuild/formats/xyz.py
mbuild/lib/__init__.py
mbuild/lib/atoms/__init__.py
mbuild/lib/atoms/c3.py
mbuild/lib/atoms/h.py
mbuild/lib/atoms/n4.py
mbuild/lib/bulk_materials/__init__.py
mbuild/lib/bulk_materials/amorphous_silica.pdb
mbuild/lib/bulk_materials/amorphous_silica.py
mbuild/lib/moieties/__init__.py
mbuild/lib/moieties/ch2.pdb
mbuild/lib/moieties/ch2.py
mbuild/lib/moieties/ch3.pdb
mbuild/lib/moieties/ch3.py
mbuild/lib/moieties/ester.pdb
mbuild/lib/moieties/ester.py
mbuild/lib/moieties/h2o.py
mbuild/lib/moieties/peg.py
mbuild/lib/moieties/peg_monomer.pdb
mbuild/lib/moieties/silane.pdb
mbuild/lib/moieties/silane.py
mbuild/lib/recipes/__init__.py
mbuild/lib/recipes/monolayer.py
mbuild/lib/recipes/polymer.py
mbuild/lib/recipes/silica_interface.py
mbuild/lib/recipes/tiled_compound.py
mbuild/lib/surfaces/__init__.py
mbuild/lib/surfaces/amorphous_silica.py
mbuild/lib/surfaces/amorphous_silica_sr1.0.pdb
mbuild/lib/surfaces/beta-cristobalite-expanded.mol2
mbuild/lib/surfaces/betacristobalite.py
mbuild/recipes/__init__.py
mbuild/tests/__init__.py
mbuild/tests/base_test.py
mbuild/tests/test_box.py
mbuild/tests/test_coarse_graining.py
mbuild/tests/test_compound.py
mbuild/tests/test_coordinate_transform.py
mbuild/tests/test_gsd.py
mbuild/tests/test_hoomdxml.py
mbuild/tests/test_json_formats.py
mbuild/tests/test_lammpsdata.py
mbuild/tests/test_lattice.py
mbuild/tests/test_mol2file.py
mbuild/tests/test_monolayer.py
mbuild/tests/test_packing.py
mbuild/tests/test_par.py
mbuild/tests/test_pattern.py
mbuild/tests/test_plugins.py
mbuild/tests/test_polymer.py
mbuild/tests/test_port.py
mbuild/tests/test_protobuf.py
mbuild/tests/test_rigid.py
mbuild/tests/test_silica_interface.py
mbuild/tests/test_tiled_compound.py
mbuild/tests/test_utils.py
mbuild/tests/test_vasp.py
mbuild/tests/test_xyz.py
mbuild/utils/__init__.py
mbuild/utils/conversion.py
mbuild/utils/decorators.py
mbuild/utils/geometry.py
mbuild/utils/io.py
mbuild/utils/jsutils.py
mbuild/utils/sorting.py
mbuild/utils/validation.py
mbuild/utils/reference/benzene-nonelement.mol2
mbuild/utils/reference/benzene.mol2
mbuild/utils/reference/cg-chol.pdb
mbuild/utils/reference/ch.mol2
mbuild/utils/reference/charmm_dihedral.mol2
mbuild/utils/reference/charmm_truncated.xml
mbuild/utils/reference/cholesterol.pdb
mbuild/utils/reference/ecer2.pdb
mbuild/utils/reference/ethane.xyz
mbuild/utils/reference/methane_oplssaa.xml
mbuild/utils/reference/methyl.mol2
mbuild/utils/reference/methyl.pdb
mbuild/utils/reference/monolayer.pdb
mbuild/utils/reference/p3ht.smi
mbuild/utils/reference/small_oplsaa.xml
mbuild/utils/reference/styrene.mol2
mbuild/utils/reference/too_few_atoms.xyz
mbuild/utils/reference/too_many_atoms.xyz