.gitignore
.pre-commit-config.yaml
LICENSE
README.md
TODO.md
pyproject.toml
schema.json
.github/workflows/checks.yaml
.github/workflows/release.yaml
notebooks/analysis/README.md
notebooks/analysis/experiment_scoresets.txt
notebooks/analysis/mapping_analysis.ipynb
notebooks/analysis/mave_mapping_fig_3b.R
notebooks/analysis/mavedb_mapping.ipynb
notebooks/analysis/mavedb_scoreset_breakdown.ipynb
notebooks/analysis/requirements.txt
notebooks/analysis/.ipynb_checkpoints/mave_target_reference_analysis-checkpoint.ipynb
notebooks/analysis/results/vrs_mappings_noncoding.pickle
sample_mappings/00000001-a-4.json
sample_mappings/00000001-c-1.json
sample_mappings/00000001-c-2.json
sample_mappings/00000005-a-6.json
sample_mappings/00000041-a-1.json
sample_mappings/00000043-a-1.json
sample_mappings/00000043-a-2.json
sample_mappings/00000045-c-1.json
sample_mappings/00000045-k-1.json
sample_mappings/00000048-a-1.json
sample_mappings/00000049-a-3.json
sample_mappings/00000049-a-7.json
sample_mappings/00000050-a-1.json
sample_mappings/00000055-0-1.json
sample_mappings/00000060-a-2.json
sample_mappings/00000061-d-1.json
sample_mappings/00000061-i-1.json
sample_mappings/00000067-a-1.json
sample_mappings/00000068-b-1.json
sample_mappings/00000069-a-2.json
sample_mappings/00000078-a-1.json
sample_mappings/00000081-a-1.json
sample_mappings/00000094-a-14.json
sample_mappings/00000094-a-5.json
sample_mappings/00000094-a-6.json
sample_mappings/00000098-a-1.json
sample_mappings/00000099-a-1.json
sample_mappings/00000103-c-1.json
src/dcd_mapping/__init__.py
src/dcd_mapping/align.py
src/dcd_mapping/annotate.py
src/dcd_mapping/cli.py
src/dcd_mapping/lookup.py
src/dcd_mapping/main.py
src/dcd_mapping/mavedb_data.py
src/dcd_mapping/resource_utils.py
src/dcd_mapping/schemas.py
src/dcd_mapping/transcripts.py
src/dcd_mapping/vrs_map.py
src/dcd_mapping/vrs_v1_schemas.py
src/dcd_mapping.egg-info/PKG-INFO
src/dcd_mapping.egg-info/SOURCES.txt
src/dcd_mapping.egg-info/dependency_links.txt
src/dcd_mapping.egg-info/entry_points.txt
src/dcd_mapping.egg-info/requires.txt
src/dcd_mapping.egg-info/top_level.txt
tests/conftest.py
tests/test_align.py
tests/test_mavedb_data.py
tests/test_transcript.py
tests/test_vrs_map.py
tests/fixtures/align_result.json
tests/fixtures/scoreset_metadata.json
tests/fixtures/scoreset_metadata_response.json
tests/fixtures/transcript_result.json
tests/fixtures/urn:mavedb:00000001-b-2_scores.csv
tests/fixtures/urn:mavedb:00000002-a-2_scores.csv
tests/fixtures/urn:mavedb:00000018-a-1_scores.csv
tests/fixtures/urn:mavedb:00000024-a-1_scores.csv
tests/fixtures/urn:mavedb:00000041-a-1_scores.csv
tests/fixtures/urn:mavedb:00000068-a-1_scores.csv
tests/fixtures/urn:mavedb:00000093-a-1_scores.csv
tests/fixtures/urn:mavedb:00000099-a-1_scores.csv
tests/fixtures/urn:mavedb:00000103-c-1_scores.csv
tests/fixtures/vrs_map.json