Metadata-Version: 2.2
Name: arnie
Version: 0.2.4
Summary: A Python utility library to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
Author-email: Das Lab <thedaslab@stanford.edu>
Project-URL: Homepage, https://github.com/DasLab/arnie
Project-URL: Documentation, https://daslab.github.io/arnie
Project-URL: Bug Tracker, https://github.com/DasLab/arnie/issues
Keywords: RNA,RNA structure prediction,Bioinformatics
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy>=1.15
Requires-Dist: scipy>=1.5.0
Requires-Dist: matplotlib>=3.0.0

# arnie
Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.

## Documentation
[See our full docs.](https://daslab.github.io/arnie)

## Install
`arnie` is [available on PyPI](https://pypi.org/project/arnie/).

`pip install arnie`

## Repo Organization

`src/arnie`: source code for the arnie package.

`docs`: docsify-based markdown documentation for the arnie package.

`tests`: unit tests 

`notebooks`: example jupyter notebooks with usage.

`scripts`: scripts for processing sequences in batch.

`parameter_files`: dir of various parameter files for packages, put here out of convenience.


(c) 2024 Leland Stanford Jr University
Authors:
Hannah Wayment-Steele
